Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L13
(515 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 49 2e-06
At3g42690.1 68416.m04439 Ulp1 protease family protein contains P... 29 1.4
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 29 2.5
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 29 2.5
At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger) fa... 28 3.2
At2g32920.1 68415.m04036 thioredoxin family protein similar to S... 28 4.3
At2g26460.1 68415.m03175 RED family protein similar to Red prote... 27 5.7
At1g06650.2 68414.m00705 2-oxoglutarate-dependent dioxygenase, p... 27 5.7
At1g06650.1 68414.m00704 2-oxoglutarate-dependent dioxygenase, p... 27 5.7
At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical t... 27 7.5
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 27 7.5
At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein... 27 9.9
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 27 9.9
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 27 9.9
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240: Ubiquitin
family
Length = 1919
Score = 49.2 bits (112), Expect = 2e-06
Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +2
Query: 152 LGQIKQEPDLLHTTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMAGGPSS-PL 328
LGQ+K+ L + K CGACGQ GHMRTNK CP Y + P +
Sbjct: 1371 LGQLKKVKILNENLKVFKEKKSARENFVCGACGQHGHMRTNKHCPRYRENTESQPEGIDM 1430
Query: 329 DTDA-EPPSIEP 361
D A +P S EP
Sbjct: 1431 DKSAGKPSSSEP 1442
>At3g42690.1 68416.m04439 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At2g11345, At4g04130
Length = 1009
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 314 PSSPLDTDA--EPPSIEPEDDDLGYVDGTKLTLPSKI 418
P SP+ T+A EP SI EDD L T + +P KI
Sbjct: 574 PPSPMPTEAAKEPMSIAVEDDILAGEGVTAMDIPEKI 610
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +2
Query: 182 LHTTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMAGGPSSPL 328
+H + R P + KC CGQ GH ++ CP +GS P+
Sbjct: 247 VHFSILREVITYPGQQEKCFVCGQTGHFASD--CPGKSGSNNAAADIPI 293
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 168 CLI*PNGIKPWDGKDKSIVDDVMLEL 91
C +GIK WD + KSIV+D+ ++L
Sbjct: 251 CAATEHGIKIWDLESKSIVEDLKVDL 276
>At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 214
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 185 HTTSRRRAKLKPDLKLKC-GACGQVGHMRTNKACPLYT 295
H +RR+ LK L+ KC G CG ++R L++
Sbjct: 34 HDLTRRKRTLKERLRFKCIGCCGPTWNLRLTNNTTLHS 71
>At2g32920.1 68415.m04036 thioredoxin family protein similar to
SP|Q15084 Protein disulfide isomerase A6 precursor (EC
5.3.4.1) {Homo sapiens}; contains Pfam profile PF00085:
Thioredoxin
Length = 440
Score = 27.9 bits (59), Expect = 4.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 144 KPWDGKDKSIVDDVMLELSEILG 76
K WDGKD ++++ L E++G
Sbjct: 407 KEWDGKDGELIEEDEFSLDELMG 429
>At2g26460.1 68415.m03175 RED family protein similar to Red protein
(RER protein) (Swiss-Prot:Q9Z1M8) [Mus musculus]
Length = 585
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 341 EPPSIEPEDDDLGYVDGTKLTLPSKIIKQ 427
EPP +DDD+ +G T+P K + Q
Sbjct: 282 EPPVARTDDDDIFVGEGVDYTVPGKDVTQ 310
>At1g06650.2 68414.m00705 2-oxoglutarate-dependent dioxygenase,
putative similar to 2A6 (GI:599622) and tomato ethylene
synthesis regulatory protein E8 (SP|P10967); contains
Pfam profile: PF00671 Iron/Ascorbate oxidoreductase
family
Length = 369
Score = 27.5 bits (58), Expect = 5.7
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -3
Query: 234 FNFKSGFSLARRRDVVWRRSGSCLI*PNGIKPWDGKDKSIVDDVMLELS-EILGPGTVTF 58
F + S F L WR + SC + P+ KP D + I D+M+E S +++ G F
Sbjct: 139 FLYLSNFDLFSSPAANWRDTFSCTMAPDTPKPQDLPE--ICRDIMMEYSKQVMNLGKFLF 196
>At1g06650.1 68414.m00704 2-oxoglutarate-dependent dioxygenase,
putative similar to 2A6 (GI:599622) and tomato ethylene
synthesis regulatory protein E8 (SP|P10967); contains
Pfam profile: PF00671 Iron/Ascorbate oxidoreductase
family
Length = 314
Score = 27.5 bits (58), Expect = 5.7
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -3
Query: 234 FNFKSGFSLARRRDVVWRRSGSCLI*PNGIKPWDGKDKSIVDDVMLELS-EILGPGTVTF 58
F + S F L WR + SC + P+ KP D + I D+M+E S +++ G F
Sbjct: 139 FLYLSNFDLFSSPAANWRDTFSCTMAPDTPKPQDLPE--ICRDIMMEYSKQVMNLGKFLF 196
>At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893
Length = 687
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -1
Query: 332 YQVEK-KVLQP*NRYTGDTPCLYAYDPLD 249
YQ EK +Q NRY GD P L + PLD
Sbjct: 122 YQSEKGPFVQHINRYLGDDPFLKQFLPLD 150
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 143 LIPLGQIKQEPDLLHTTSRRRAKLKPDLKLKCGACGQVGHMRTN 274
LI LG E +H + R P + +C CGQ+GH +N
Sbjct: 236 LIMLGLATHE---VHFSILREVVYTPGQQERCFLCGQMGHFASN 276
>At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 595
Score = 26.6 bits (56), Expect = 9.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 230 LKCGACGQVGHMRTNKACPL 289
+KC CG GH ++ CPL
Sbjct: 211 VKCLRCGNFGHQSGDRDCPL 230
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 168 CLI*PNGIKPWDGKDKSIVDDVMLEL 91
C N I+ WD + KS+V+D+ ++L
Sbjct: 250 CAATENSIRIWDLESKSVVEDLKVDL 275
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 168 CLI*PNGIKPWDGKDKSIVDDVMLEL 91
C N I+ WD + KS+V+D+ ++L
Sbjct: 250 CAATENSIRIWDLESKSVVEDLKVDL 275
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,414,499
Number of Sequences: 28952
Number of extensions: 168717
Number of successful extensions: 576
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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