Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L12
         (408 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548...    27   4.3  
03_06_0121 - 31806498-31807220                                         27   5.7  
02_02_0694 + 13013966-13014361                                         27   7.6  
01_01_0359 + 2829325-2832076,2832223-2832593,2833335-2833695,283...    27   7.6  

>06_03_1508 -
           30653967-30654245,30654342-30654631,30654773-30654841,
           30654854-30654921,30655016-30655492,30655578-30655874,
           30655974-30656824,30656917-30656990,30657270-30657292,
           30657709-30657772,30658098-30658370,30658511-30658587,
           30658686-30658912
          Length = 1022

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = +1

Query: 10  MNQNLTTLSLMTPSQMILMMIVSVWFVIQLMTNTKKLQSKHQK 138
           +NQ++T    +    + L++++   F  QL+TN +K Q+K ++
Sbjct: 234 VNQDITIFGALLVGALSLVLLIIYNFSGQLLTNREKKQAKSRE 276


>03_06_0121 - 31806498-31807220
          Length = 240

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 52  QMILMMIVSVWFVIQLMTNTKK 117
           Q++L++ VSVW V QL  N ++
Sbjct: 23  QVVLLVAVSVWLVYQLTRNRRR 44


>02_02_0694 + 13013966-13014361
          Length = 131

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 102 HQLYHEPHGDYHH*NHLTWSHQ 37
           H  +H  HG +HH  H  W+ +
Sbjct: 77  HHHHHRHHGHHHHRGHDRWNRK 98


>01_01_0359 +
           2829325-2832076,2832223-2832593,2833335-2833695,
           2833799-2833868,2834021-2834108,2834325-2834580,
           2834758-2834883,2835217-2835425
          Length = 1410

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 10/47 (21%), Positives = 31/47 (65%)
 Frame = +1

Query: 1   ARGMNQNLTTLSLMTPSQMILMMIVSVWFVIQLMTNTKKLQSKHQKR 141
           ++  NQ+L +L++  P+   ++++VSV  ++ ++ + +KL+ +  ++
Sbjct: 662 SKNKNQHLKSLAIALPTTGAMLVLVSV--IVLILLHNRKLKRRQNRQ 706


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,071,660
Number of Sequences: 37544
Number of extensions: 33910
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)