Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L12
         (408 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   1.7  
AF026209-6|AAB71281.1|  340|Caenorhabditis elegans Serpentine re...    27   6.9  

>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 102 HQLYHEPHGDYHH*NH 55
           H  +HE HGD+HH +H
Sbjct: 636 HHEHHEHHGDHHHGSH 651


>AF026209-6|AAB71281.1|  340|Caenorhabditis elegans Serpentine
           receptor, class j protein24 protein.
          Length = 340

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 146 HFLFWCFDCSFFV 108
           HF+FW F C +F+
Sbjct: 142 HFMFWTFTCYYFI 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,701,508
Number of Sequences: 27780
Number of extensions: 35072
Number of successful extensions: 140
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)