Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L11
(474 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 91 8e-20
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces... 27 1.5
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 1.5
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ... 26 2.5
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom... 26 2.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 4.5
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 5.9
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 25 7.8
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 25 7.8
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 25 7.8
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo... 25 7.8
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 91.1 bits (216), Expect = 8e-20
Identities = 43/73 (58%), Positives = 56/73 (76%)
Frame = +2
Query: 251 KRSSAVKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 430
++ A +HV+F+ R+ILPKP K+RV QKRPRSRTLT+V++AILED+VFP EI+GKR
Sbjct: 84 EKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAVHNAILEDIVFPTEIIGKR 141
Query: 431 IRVKLDGSQLIKV 469
R DG + IKV
Sbjct: 142 TRQATDGRKTIKV 154
Score = 77.8 bits (183), Expect = 8e-16
Identities = 39/85 (45%), Positives = 59/85 (69%), Gaps = 2/85 (2%)
Frame = +1
Query: 22 KILKAGAIEPDTFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 195
KI+K + +P + ++Q L +LE++S D+ +LR L IT A+E+E+ KK+I+++VP
Sbjct: 6 KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65
Query: 196 MPKLKAFQKIQIRLVRELEKKFSGK 270
P LKAF K Q RL RELEKKF+ +
Sbjct: 66 QPLLKAFHKCQARLTRELEKKFADR 90
>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 118
Score = 27.1 bits (57), Expect = 1.5
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = +1
Query: 52 DTFETSISQALVELETNSDLKAQLRELYITKAKEIEL 162
+T+E I + L++L + S++ Q+ ++I E+E+
Sbjct: 78 ETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEV 114
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.1 bits (57), Expect = 1.5
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +1
Query: 28 LKAGA-IEPDTFETSISQALVE--LETNSDLKAQLRELY 135
+KA A I+PD FE +I Q L + N LK ++ +LY
Sbjct: 2123 VKANAFIDPDNFEVNIEQTLSKNFFGNNQYLKLKIMQLY 2161
>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 263
Score = 26.2 bits (55), Expect = 2.5
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = -3
Query: 469 HFDEL*AIELHSDA--FANN--LGREYQIFQYGVIYRSQCPGTGPFLFV 335
H D + ++ +DA F+N+ + + + G+IYRS CP F F+
Sbjct: 36 HKDGIKVVDTSNDASTFSNSPLVPDNFGVVYPGIIYRSACPRASNFNFL 84
>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 26.2 bits (55), Expect = 2.5
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = -2
Query: 314 WAWAGSYGHQRTQHALPLNFFSNSRTSLIWIFWNAFS 204
W+ S + A+ L F+ R S +W WN S
Sbjct: 217 WSTLNSIKYFTAFPAIFLGIFAKKRFSFLWFLWNTSS 253
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +1
Query: 25 ILKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIEL 162
I + G + +TF+ +SQA ++ + L +RE ++ E +L
Sbjct: 3170 ISRLGVVSKNTFQLPMSQANIQRFAENVLPVSVREAFLRDFVETKL 3215
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 5.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 305 PKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 430
P S + R N+++ RSR S + + LED+++ V R
Sbjct: 49 PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 24.6 bits (51), Expect = 7.8
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 184 IYVPMPKLKAFQKIQIRLVRELEKKFSGK 270
+++P K F+KI+ +VRE E+K +GK
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGK 128
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 24.6 bits (51), Expect = 7.8
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -2
Query: 389 IWRHIQKSVSWNGAFSVCWLHVSCGWAWAGS 297
+W HI+ W F++ L CG W S
Sbjct: 247 VWSHIENYTDWPDGFAI--LMSFCGVIWTMS 275
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 24.6 bits (51), Expect = 7.8
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 140 PRPRKLNFITKNPLSFM 190
P+PRK+ F++ PLS +
Sbjct: 132 PQPRKMQFLSLEPLSLL 148
>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 325
Score = 24.6 bits (51), Expect = 7.8
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 28 LKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIE 159
L A+E T E + V + S LKA +++ + K E++
Sbjct: 92 LLKSAVETITLENGLRNRRVNVTKKSTLKASVKKSTLKKKNEVD 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,846
Number of Sequences: 5004
Number of extensions: 43154
Number of successful extensions: 130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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