Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L11
(474 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 88 4e-18
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 72 2e-13
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 45 3e-05
10_08_0041 - 14374684-14377339,14377371-14378233 32 0.27
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141... 29 1.4
07_03_0799 - 21587003-21587040,21588262-21588658 29 2.5
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 2.5
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 2.5
05_04_0354 - 20545574-20545627,20546430-20546754,20547219-20547802 28 3.3
04_04_0378 - 24822436-24822521,24822623-24822738,24823010-248230... 28 3.3
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 28 4.4
02_01_0293 + 1955439-1956457,1957002-1957322,1957405-1957411,195... 28 4.4
11_02_0078 - 8074247-8074837,8075815-8076341,8076453-8077022,807... 27 5.8
03_01_0306 + 2391831-2391858,2392831-2392902,2393511-2393698,239... 27 7.7
01_01_0823 - 6407635-6407731,6407786-6407857,6409766-6409872 27 7.7
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 87.8 bits (208), Expect = 4e-18
Identities = 43/85 (50%), Positives = 63/85 (74%), Gaps = 2/85 (2%)
Frame = +1
Query: 22 KILKAGAIEPDTFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 195
KI K +EP FE S++QA +LE N +LK++L++LYI A ++++ N+K+++I+VP
Sbjct: 7 KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVP 66
Query: 196 MPKLKAFQKIQIRLVRELEKKFSGK 270
KAF+KI +RLVRELEKKFSGK
Sbjct: 67 YRLRKAFKKIHVRLVRELEKKFSGK 91
Score = 74.1 bits (174), Expect = 5e-14
Identities = 37/67 (55%), Positives = 51/67 (76%)
Frame = +2
Query: 269 KHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLD 448
K VV V R+I+ P + V +RPR+RTLT+V+D ILED+V+PAEIVGKRIR +LD
Sbjct: 91 KDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAVHDGILEDVVYPAEIVGKRIRYRLD 146
Query: 449 GSQLIKV 469
G+++IK+
Sbjct: 147 GAKVIKI 153
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 72.1 bits (169), Expect = 2e-13
Identities = 37/67 (55%), Positives = 51/67 (76%), Gaps = 2/67 (2%)
Frame = +1
Query: 76 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 249
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP KA++KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 250 EKKFSGK 270
EKKFSGK
Sbjct: 98 EKKFSGK 104
Score = 70.5 bits (165), Expect = 6e-13
Identities = 35/67 (52%), Positives = 48/67 (71%)
Frame = +2
Query: 269 KHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLD 448
K VV V R+I+ P + V RPR+RTLT+V+D ILED+V+PAEIVGKR+R LD
Sbjct: 104 KDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKRVRYHLD 159
Query: 449 GSQLIKV 469
G +++K+
Sbjct: 160 GRKIMKI 166
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 45.2 bits (102), Expect = 3e-05
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +1
Query: 130 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGK 270
+Y+ ++ N K ++I+V KAF+KI +RLV+ELEKKFSGK
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGK 76
Score = 35.9 bits (79), Expect = 0.017
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = +2
Query: 269 KHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG 424
K VVF R+I+ +P +K + PR+RTL +V+D ILED+V ++G
Sbjct: 76 KDVVFDATRRIV-RPLNKGSAVH---HPRTRTLITVHDGILEDVVSQLRLLG 123
>10_08_0041 - 14374684-14377339,14377371-14378233
Length = 1172
Score = 31.9 bits (69), Expect = 0.27
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = -1
Query: 270 FTAELLF*LTDKPDLDLLECLQFGHRHINDNGFFVM--KFNFLGLGNVQFPQLSLQVRVS 97
F A+ ++ +P + + C Q R++N G F M F F+G G Q P + + ++
Sbjct: 682 FAADAATNVSHRP-VTSISCYQHMRRYVNGGGIFQMGLTFAFVGEGE-QAPSPLIALEIN 739
Query: 96 LKFNKSLRDRSLEGVGFYSTRFEDFRTH 13
FN + + + F S++ D H
Sbjct: 740 FDFNVNSPKYHGKSIDFLSSQGHDLTQH 767
>12_01_0191 +
1413287-1413346,1413504-1413632,1416819-1416998,
1417747-1417938,1418533-1418673,1418785-1418912,
1419088-1419262,1419664-1419852,1420628-1420749,
1420829-1420874
Length = 453
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 350 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIK 466
P +RTLT+ +D IL+D + A+I GK + + + +IK
Sbjct: 86 PNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIK 123
>07_03_0799 - 21587003-21587040,21588262-21588658
Length = 144
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -2
Query: 323 SCGWAWAGSYGHQRTQHALPLNFFSNSRTSLIWIFWNAFSLGIGT*MIMD 174
SC W W G + +Q +P+ S L+W +W+ +L + + ++ D
Sbjct: 86 SCRWVWRGLRRSKASQRGMPVQ-GSYMSAELVW-WWSFGALAVDSQVVSD 133
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 2.5
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +1
Query: 82 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 216
LVE+ D ++ + Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +1
Query: 82 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 216
LVE+ D ++ + Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>05_04_0354 - 20545574-20545627,20546430-20546754,20547219-20547802
Length = 320
Score = 28.3 bits (60), Expect = 3.3
Identities = 30/102 (29%), Positives = 38/102 (37%), Gaps = 9/102 (8%)
Frame = -1
Query: 303 RILRSPTNTTCFTAELLF*LTDKPDLDLLECLQFGHRHINDNG---------FFVMKFNF 151
R R+P T +TA D +L E L FGHRH N G F + +F
Sbjct: 134 RARRAPGTVTGYTAAHADRFVD--NLPWKETLSFGHRHANAAGNNSSTVADYFSTLGDDF 191
Query: 150 LGLGNVQFPQLSLQVRVSLKFNKSLRDRSLEGVGFYSTRFED 25
LG V V+ L + G G+Y FED
Sbjct: 192 KHLGEVYQEYCEAMEEVTKAIMAVLGESLGVGGGYYREFFED 233
>04_04_0378 -
24822436-24822521,24822623-24822738,24823010-24823092,
24823772-24823918,24824004-24824051,24824153-24824353,
24824981-24825152,24825235-24825299,24825813-24825939,
24826436-24826528,24826608-24826696,24826804-24826950,
24827047-24827359,24827474-24828048
Length = 753
Score = 28.3 bits (60), Expect = 3.3
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 22 KILKAGAIEPDTFET--SISQALVELETNSDLKAQLRELYITKAKEIELHN 168
K LK +E D E ISQAL L + S + + +E KEIEL+N
Sbjct: 565 KELKKAKVEHDRKEQLCDISQALAVLASASSVAKERQEFLNLVNKEIELYN 615
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 27.9 bits (59), Expect = 4.4
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +1
Query: 82 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 216
LVE+ D ++ + Y+ + L +K +++Y+ K+ F
Sbjct: 80 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124
>02_01_0293 +
1955439-1956457,1957002-1957322,1957405-1957411,
1957954-1958041,1958143-1958324,1958508-1958644,
1958790-1958856,1959132-1959246,1959390-1959501,
1960420-1960495,1960576-1960758,1961166-1961326,
1961463-1961532,1962721-1962928,1963015-1963304,
1963388-1963509,1963605-1963749,1964040-1964113,
1964464-1964911
Length = 1274
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -2
Query: 362 SWNGAFSVCWLHVSCGWAWAGSYGHQRTQHALPLNFFSNSRTSLIWIF 219
S G +CW+H + GW A +G +L + +++ S++W+F
Sbjct: 146 SGGGVQDLCWIHHASGWLLASIHG-----PSLLCIWETSNNPSVLWMF 188
>11_02_0078 -
8074247-8074837,8075815-8076341,8076453-8077022,
8077725-8077752
Length = 571
Score = 27.5 bits (58), Expect = 5.8
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -1
Query: 471 CTLMSCEPSSFTLMRLPTISAGNTRSSNMASYTEVSVLERGLFCLLATRVLWLGLG 304
C L E F L+ TI+ + MA+ T + GL+ +LA R+LWL +G
Sbjct: 481 CILSRSEDLEF-LLYYRTITRNLMWLAYMATTTAFAT---GLYTVLAPRILWLAIG 532
>03_01_0306 + 2391831-2391858,2392831-2392902,2393511-2393698,
2394143-2394203,2394306-2394368,2394396-2394474,
2394557-2394689,2394727-2394934,2398088-2398143,
2398252-2400030,2400128-2400281,2400467-2401125
Length = 1159
Score = 27.1 bits (57), Expect = 7.7
Identities = 21/87 (24%), Positives = 40/87 (45%)
Frame = -2
Query: 428 VCQQSRPGIPDLPIWRHIQKSVSWNGAFSVCWLHVSCGWAWAGSYGHQRTQHALPLNFFS 249
+ + P LPI I +++SW+ + L + G + H+ + L F
Sbjct: 936 IIAKQEPLSRSLPIGS-IARTLSWDDSSQEATLCSAKGDSHEQDQ-HEFVEKILSSVGFD 993
Query: 248 NSRTSLIWIFWNAFSLGIGT*MIMDFL 168
N +TS I++ W++ +GT ++ FL
Sbjct: 994 NEKTSDIFVRWHSHDFPLGTGVLDQFL 1020
>01_01_0823 - 6407635-6407731,6407786-6407857,6409766-6409872
Length = 91
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 79 ALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY 189
A++E+E N DL + L T+ E H + S++IY
Sbjct: 2 AILEIEDNDDLLSLPGSLANTRIGESPSHQRDSLLIY 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,641,909
Number of Sequences: 37544
Number of extensions: 291183
Number of successful extensions: 780
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -