Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L11
(474 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0) 115 2e-26
SB_53959| Best HMM Match : 7tm_1 (HMM E-Value=0.016) 32 0.21
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006) 29 1.5
SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 28 4.5
SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059) 27 6.0
SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3) 27 6.0
SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0) 27 7.9
SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 27 7.9
SB_1011| Best HMM Match : 7tm_2 (HMM E-Value=2e-40) 27 7.9
SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
Length = 157
Score = 115 bits (276), Expect = 2e-26
Identities = 56/85 (65%), Positives = 70/85 (82%)
Frame = +1
Query: 16 STKILKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVP 195
S KI+K + FE ISQA++ELE NSD+KAQLRELYI+ AKEI++ KK+III+VP
Sbjct: 8 SAKIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIFVP 67
Query: 196 MPKLKAFQKIQIRLVRELEKKFSGK 270
+P+++AFQKIQ RLVRELEKKFSGK
Sbjct: 68 VPQIRAFQKIQTRLVRELEKKFSGK 92
Score = 40.7 bits (91), Expect = 6e-04
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +2
Query: 269 KHVVFVGDRKILPKPSHKTRVANKQKRPRS 358
KHVV V R+ILP+P+ K+R KQKRPRS
Sbjct: 92 KHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120
>SB_53959| Best HMM Match : 7tm_1 (HMM E-Value=0.016)
Length = 185
Score = 32.3 bits (70), Expect = 0.21
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -2
Query: 353 GAFSVCWLHVSCGWAWAGSYGHQRTQHALPLNFFSN 246
GAF VCWL S G +W + G HAL L +F+N
Sbjct: 105 GAFVVCWLPYSIGTSWKLATG-----HALELYWFAN 135
>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
Length = 1552
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = +1
Query: 22 KILKAGAIEP---DTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV 192
K ++ G + P + ++T ++ L + L+ +RELY +E E KKS++ ++
Sbjct: 158 KCVQEGPVTPMAQEQWDTILTMIPARLVQSPQLQPYIRELYAEVKQEYEASIKKSMVQHI 217
Query: 193 PM-PKLKAFQ 219
+ PK+K +
Sbjct: 218 LVKPKVKGVE 227
>SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1177
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 260 SAVKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILED 397
S +KH + VGD+ +LP P TR + R R + ++AI+E+
Sbjct: 1116 SGIKHRITVGDKHVLPDP---TRRGPSETRTTKRETS--HEAIVEE 1156
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 27.9 bits (59), Expect = 4.5
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Frame = +1
Query: 94 ETNSDLKAQLRE----LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 258
E N+ LK +L E L +T+ +E E+ N K + +YV M KL++ Q ELEK+
Sbjct: 1699 EDNAILKRKLDEKETALKVTQDREREM-NDKLMALYVNMSKLESTQGTLEEKNAELEKE 1756
>SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 712
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +2
Query: 254 RSSAVKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 430
R +V+ + DR+ + K + R+ + + TL V DA+ E+L P +++G R
Sbjct: 507 RQVSVEDRPMMSDRRSMSKHGVQWRILSIYYTDTTVTLEEVKDAVKEELDGPGKLLGYR 565
>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
Length = 591
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 52 DTFETSISQALVELETNSDLKAQLRELYITKAKE-IELHNKKSIII 186
+T + + + +LE D KAQL EL + KAKE L KS +
Sbjct: 224 ETLQEQEKETIQQLE--EDFKAQLNELEVEKAKEQTALEEMKSFTV 267
>SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)
Length = 151
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/26 (42%), Positives = 21/26 (80%)
Frame = +1
Query: 190 VPMPKLKAFQKIQIRLVRELEKKFSG 267
VP+P++ A QK++ +L R++E+K +G
Sbjct: 69 VPLPQVSAMQKVKGKL-RDMEQKLNG 93
>SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1182
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +1
Query: 139 TKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKACCVRW 288
+K + IE+ +++I + +L+ +K + L E++KK+ CV W
Sbjct: 1129 SKIRRIEIIERETITYENLIDELRELRKKMVALKAEVKKKYRLVTGCVPW 1178
>SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 380
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +1
Query: 55 TFETSISQALVELETNSDLKAQLRELYITKAKEI-----ELHNKKSIIIYVPMPKLKAFQ 219
T + Q E++T+ + K +RE ITK K + E +++++ + K+
Sbjct: 241 TLSDAAKQCSTEIKTSENKKMTIREDMITKRKHVRDRRREHREEETVLRKDELDKVAKLY 300
Query: 220 KIQIRLVRELEKKF 261
+ + + +RE+E++F
Sbjct: 301 EEEKQDLREMEQEF 314
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/77 (23%), Positives = 35/77 (45%)
Frame = +1
Query: 28 LKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 207
LKA T ET S E E ++ RE+ + ++ H+++ + L
Sbjct: 35 LKASQFRKLTRETGASVLRNERERSAKRAQAFREISPSSPQDRRKHSERRPFLATECDNL 94
Query: 208 KAFQKIQIRLVRELEKK 258
+ +K + +++RE+ KK
Sbjct: 95 QEAEKWRHQIIREVAKK 111
>SB_1011| Best HMM Match : 7tm_2 (HMM E-Value=2e-40)
Length = 406
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 371 KSVSWNGAFSVCWLHVSCGWAWA 303
K ++GA + CWL V G WA
Sbjct: 260 KGYGYHGAQTACWLSVDNGLIWA 282
>SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 917
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 290 DRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILED 397
D I+P P H+T N +K L S+ D +D
Sbjct: 434 DELIIPPPRHRTETHNDEKFNVEERLRSLLDVAADD 469
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,661,158
Number of Sequences: 59808
Number of extensions: 335794
Number of successful extensions: 967
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -