Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L11
(474 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 89 1e-18
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 89 1e-18
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 84 5e-17
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 76 1e-14
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 76 1e-14
At4g28430.1 68417.m04069 reticulon family protein contains Pfam ... 30 0.70
At4g15710.1 68417.m02391 hypothetical protein 29 1.6
At1g27920.1 68414.m03421 microtubule associated protein (MAP65/A... 27 8.6
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 89.4 bits (212), Expect = 1e-18
Identities = 44/85 (51%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Frame = +1
Query: 22 KILKAGAIEPDTFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 195
KI K + P FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 196 MPKLKAFQKIQIRLVRELEKKFSGK 270
KAF+KI +RLVRELEKKFSGK
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGK 91
Score = 72.5 bits (170), Expect = 1e-13
Identities = 35/67 (52%), Positives = 51/67 (76%)
Frame = +2
Query: 269 KHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLD 448
K V+FV R+I+ P + V +RPR+RTLTSV++A+LED+ +PAEIVGKR R +LD
Sbjct: 91 KDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRLD 146
Query: 449 GSQLIKV 469
G++++KV
Sbjct: 147 GTKIMKV 153
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 89.4 bits (212), Expect = 1e-18
Identities = 44/85 (51%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Frame = +1
Query: 22 KILKAGAIEPDTFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 195
KI K + P FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 196 MPKLKAFQKIQIRLVRELEKKFSGK 270
KAF+KI +RLVRELEKKFSGK
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGK 91
Score = 72.5 bits (170), Expect = 1e-13
Identities = 35/67 (52%), Positives = 51/67 (76%)
Frame = +2
Query: 269 KHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLD 448
K V+FV R+I+ P + V +RPR+RTLTSV++A+LED+ +PAEIVGKR R +LD
Sbjct: 91 KDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRLD 146
Query: 449 GSQLIKV 469
G++++KV
Sbjct: 147 GTKIMKV 153
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 83.8 bits (198), Expect = 5e-17
Identities = 44/85 (51%), Positives = 61/85 (71%), Gaps = 2/85 (2%)
Frame = +1
Query: 22 KILKAGAIEPDTFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 195
KI K EP E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 7 KIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVP 66
Query: 196 MPKLKAFQKIQIRLVRELEKKFSGK 270
KAF+KI RLVRELEKKFSGK
Sbjct: 67 FRLRKAFRKIHPRLVRELEKKFSGK 91
Score = 73.7 bits (173), Expect = 6e-14
Identities = 37/67 (55%), Positives = 50/67 (74%)
Frame = +2
Query: 269 KHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLD 448
K V+FV R+I+ P V +RPR+RTLTSV++A+LED+ FPAEIVGKR R +LD
Sbjct: 91 KDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSVHEAMLEDVAFPAEIVGKRTRYRLD 146
Query: 449 GSQLIKV 469
GS+++KV
Sbjct: 147 GSKIMKV 153
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 76.2 bits (179), Expect = 1e-14
Identities = 37/85 (43%), Positives = 59/85 (69%), Gaps = 2/85 (2%)
Frame = +1
Query: 22 KILKAGAIEPDTFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 195
KI K +E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 196 MPKLKAFQKIQIRLVRELEKKFSGK 270
KA++KI +RLVRELEKKFSGK
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGK 91
Score = 70.9 bits (166), Expect = 4e-13
Identities = 36/67 (53%), Positives = 51/67 (76%)
Frame = +2
Query: 269 KHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLD 448
K V+ + R+I+ +P K A KRPR+RTLTSV++AIL+D+V PAEIVGKR R +LD
Sbjct: 91 KDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVGKRTRYRLD 146
Query: 449 GSQLIKV 469
G++++KV
Sbjct: 147 GTKIMKV 153
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 76.2 bits (179), Expect = 1e-14
Identities = 37/85 (43%), Positives = 59/85 (69%), Gaps = 2/85 (2%)
Frame = +1
Query: 22 KILKAGAIEPDTFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 195
KI K +E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 196 MPKLKAFQKIQIRLVRELEKKFSGK 270
KA++KI +RLVRELEKKFSGK
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGK 91
Score = 70.9 bits (166), Expect = 4e-13
Identities = 36/67 (53%), Positives = 51/67 (76%)
Frame = +2
Query: 269 KHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLD 448
K V+ + R+I+ +P K A KRPR+RTLTSV++AIL+D+V PAEIVGKR R +LD
Sbjct: 91 KDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVGKRTRYRLD 146
Query: 449 GSQLIKV 469
G++++KV
Sbjct: 147 GTKIMKV 153
>At4g28430.1 68417.m04069 reticulon family protein contains Pfam
profile PF02453: Reticulon
Length = 457
Score = 30.3 bits (65), Expect = 0.70
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 422 QQSRPGIPDLPIWRHIQKSVSWNGAFSVCWL 330
++ R I DL +WR + KS W G +C+L
Sbjct: 189 ERIRENISDLIMWRDVAKSTLWFGFGCICFL 219
>At4g15710.1 68417.m02391 hypothetical protein
Length = 141
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = -1
Query: 183 DNGFFVMKFNFLGLGNVQFPQLSLQVRVSLKFNKSLRDRSLEGVGFYS 40
D FF MKF + G G++ + + +L++R +L + ++RD + V +S
Sbjct: 86 DYKFFAMKFEWAGEGDLDYTRSNLELR-TLLIDAAMRDHDDDYVRAWS 132
>At1g27920.1 68414.m03421 microtubule associated protein
(MAP65/ASE1) family protein low similarity to protein
regulating cytokinesis 1 (PRC1) [Homo sapiens]
GI:2865521; contains Pfam profile PF03999: Microtubule
associated protein (MAP65/ASE1 family)
Length = 592
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 70 ISQALVELETNSDLKA-QLRELYITKAKEIE 159
I QA E++ LKA +++EL+I K KE+E
Sbjct: 333 IQQAEAEVKRLDQLKASRIKELFIKKQKELE 363
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,935,451
Number of Sequences: 28952
Number of extensions: 233847
Number of successful extensions: 693
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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