Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L10
         (581 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)        206   1e-53
SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score =  206 bits (502), Expect = 1e-53
 Identities = 97/131 (74%), Positives = 110/131 (83%)
 Frame = +3

Query: 114 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKL 293
           Q LDEYPK F+VG DNVGS+QMQ IR SLRG   VLMGKNTM+RKAI+ HLE NP LEKL
Sbjct: 1   QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLEKL 60

Query: 294 LPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFF 473
           LPHIKGN+GFVFT+ DL DVR  ++ENKV APA+ G IAP+ V +PA NTGLGPEKTSFF
Sbjct: 61  LPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNTGLGPEKTSFF 120

Query: 474 QALSIPTKISR 506
           QAL+IPTKI+R
Sbjct: 121 QALAIPTKIAR 131



 Score = 32.7 bits (71), Expect = 0.22
 Identities = 13/21 (61%), Positives = 18/21 (85%)
 Frame = +2

Query: 503 KGTIEIINDVHILKPGDKVGA 565
           +GTIEIINDVH++K  +K+ A
Sbjct: 131 RGTIEIINDVHLIKKDEKLKA 151


>SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 185 DPYFIAWSQHCAHGQKHHDEESHQGPS*NKSSSRKTASS 301
           D Y     QH  H Q  HD ++H+  + +++++R  A S
Sbjct: 144 DQYTTQPDQHMTHNQIDHDTQTHRPTTRSQTNTRHAARS 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,903,070
Number of Sequences: 59808
Number of extensions: 428493
Number of successful extensions: 1130
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)