Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L10
(581 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 160 7e-40
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 160 7e-40
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 155 3e-38
At3g50610.1 68416.m05534 hypothetical protein 31 0.42
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 28 4.0
At4g22580.1 68417.m03258 exostosin family protein contains Pfam ... 28 5.2
At3g21340.1 68416.m02695 leucine-rich repeat protein kinase, put... 28 5.2
At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal hydrolase-r... 27 9.1
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 27 9.1
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 160 bits (388), Expect = 7e-40
Identities = 78/151 (51%), Positives = 107/151 (70%), Gaps = 2/151 (1%)
Frame = +3
Query: 60 MGREDNATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 239
M + A K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 240 MRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 413
M+++++ H E N A+ LLP ++GNVG +FT+GDL +V +++ + KV APAR G +AP
Sbjct: 61 MKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120
Query: 414 LSVVIPAHNTGLGPEKTSFFQALSIPTKISR 506
+ VV+ NTGL P +TSFFQ L+IPTKI++
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINK 151
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +2
Query: 503 KGTIEIINDVHILKPGDKVGASEATL 580
KGT+EII V ++K GDKVG+SEA L
Sbjct: 151 KGTVEIITPVELIKQGDKVGSSEAAL 176
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 160 bits (388), Expect = 7e-40
Identities = 78/151 (51%), Positives = 107/151 (70%), Gaps = 2/151 (1%)
Frame = +3
Query: 60 MGREDNATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 239
M + A K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 240 MRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 413
M+++++ H E N A+ LLP ++GNVG +FT+GDL +V +++ + KV APAR G +AP
Sbjct: 61 MKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120
Query: 414 LSVVIPAHNTGLGPEKTSFFQALSIPTKISR 506
+ VV+ NTGL P +TSFFQ L+IPTKI++
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINK 151
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +2
Query: 503 KGTIEIINDVHILKPGDKVGASEATL 580
KGT+EII V ++K GDKVG+SEA L
Sbjct: 151 KGTVEIITPVELIKQGDKVGSSEAAL 176
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 155 bits (375), Expect = 3e-38
Identities = 74/139 (53%), Positives = 102/139 (73%), Gaps = 2/139 (1%)
Frame = +3
Query: 96 YFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLET- 272
Y K+ QLL+EY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM+++++ H +
Sbjct: 14 YDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHADKT 73
Query: 273 -NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGL 449
N A LLP ++GNVG +FT+GDL +V +++ + KV APAR G +AP+ VV+ NTGL
Sbjct: 74 GNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGL 133
Query: 450 GPEKTSFFQALSIPTKISR 506
P +TSFFQ L+IPTKI++
Sbjct: 134 DPSQTSFFQVLNIPTKINK 152
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +2
Query: 503 KGTIEIINDVHILKPGDKVGASEATL 580
KGT+EII V ++K GDKVG+SEA L
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSEAAL 177
>At3g50610.1 68416.m05534 hypothetical protein
Length = 229
Score = 31.5 bits (68), Expect = 0.42
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 258 DHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRD-KLLENKVQAPARPGAIAPLSVVIPA 434
D + T+P + H KGNV + D KLL+ VQ + G+ + P
Sbjct: 31 DFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHFKTGSTDDFAPTSPG 90
Query: 435 HNTGLGPEK 461
H+ G+G +K
Sbjct: 91 HSPGVGHKK 99
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 177 MQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKLLPHIKGNVGFV 326
+++I++ +G+ +L+G NT + K K L K+ K +GFV
Sbjct: 124 IERIKVLFKGYRDLLLGFNTFLPKGYKITLLPEEEKPKIRVDFKDAIGFV 173
>At4g22580.1 68417.m03258 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 435
Score = 27.9 bits (59), Expect = 5.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 440 HWPWS*EDFFLPGSFHPH 493
+WPW + P SFHPH
Sbjct: 213 YWPWQEQAVPYPTSFHPH 230
>At3g21340.1 68416.m02695 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 880
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 237 MMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLL 368
++ + I + L N + EK PHI VG + T+GD+ ++ D L
Sbjct: 764 VLLEIITNQLVINQSREK--PHIAEWVGLMLTKGDIQNIMDPKL 805
>At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1132
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 295 FLTSRE-MLALSSPVEILLMCVINCWRTKSKP 387
FLTS+E L++SS +++ V+N WR P
Sbjct: 897 FLTSQEEFLSMSSDAAKVVVAVLNLWRCWKNP 928
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 297 PHIKGNVGFVFTRGDLVDVRDKLL 368
PHI VGF+ T+GD+ + D L
Sbjct: 792 PHINDWVGFMLTKGDIKSIVDPKL 815
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,074,043
Number of Sequences: 28952
Number of extensions: 305514
Number of successful extensions: 907
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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