Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L08
         (429 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for...    30   0.61 
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for...    30   0.61 
AF040648-6|AAO91708.1|  908|Caenorhabditis elegans Lethal protei...    30   0.61 
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei...    30   0.61 
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei...    30   0.61 
AF016420-3|AAB65310.1|  291|Caenorhabditis elegans Serpentine re...    28   3.3  
Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U53335-7|AAA96172.2|  150|Caenorhabditis elegans Hypothetical pr...    26   10.0 

>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
           protein.
          Length = 4280

 Score = 30.3 bits (65), Expect = 0.61
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 287 LKIPFFKCKLVISIRLIDTEQNYNVLITKTNIKSHNPIVSMKC 159
           ++IP     +   +R+    +N  VL+    I++HN IVS+KC
Sbjct: 94  VQIPKLPTGISYLVRIKVIGENNEVLVETPEIRAHNEIVSIKC 136


>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
           protein.
          Length = 4450

 Score = 30.3 bits (65), Expect = 0.61
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 287 LKIPFFKCKLVISIRLIDTEQNYNVLITKTNIKSHNPIVSMKC 159
           ++IP     +   +R+    +N  VL+    I++HN IVS+KC
Sbjct: 94  VQIPKLPTGISYLVRIKVIGENNEVLVETPEIRAHNEIVSIKC 136


>AF040648-6|AAO91708.1|  908|Caenorhabditis elegans Lethal protein
           805, isoform d protein.
          Length = 908

 Score = 30.3 bits (65), Expect = 0.61
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 287 LKIPFFKCKLVISIRLIDTEQNYNVLITKTNIKSHNPIVSMKC 159
           ++IP     +   +R+    +N  VL+    I++HN IVS+KC
Sbjct: 94  VQIPKLPTGISYLVRIKVIGENNEVLVETPEIRAHNEIVSIKC 136


>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
           805, isoform b protein.
          Length = 4450

 Score = 30.3 bits (65), Expect = 0.61
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 287 LKIPFFKCKLVISIRLIDTEQNYNVLITKTNIKSHNPIVSMKC 159
           ++IP     +   +R+    +N  VL+    I++HN IVS+KC
Sbjct: 94  VQIPKLPTGISYLVRIKVIGENNEVLVETPEIRAHNEIVSIKC 136


>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
           805, isoform a protein.
          Length = 4280

 Score = 30.3 bits (65), Expect = 0.61
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 287 LKIPFFKCKLVISIRLIDTEQNYNVLITKTNIKSHNPIVSMKC 159
           ++IP     +   +R+    +N  VL+    I++HN IVS+KC
Sbjct: 94  VQIPKLPTGISYLVRIKVIGENNEVLVETPEIRAHNEIVSIKC 136


>AF016420-3|AAB65310.1|  291|Caenorhabditis elegans Serpentine
          receptor, class sx protein13 protein.
          Length = 291

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 73 VGTFYQFLFFFLDNVNQCTHNFLV 2
          V TFY+FLF F+  +  C    L+
Sbjct: 10 VATFYKFLFLFIGTIGNCLFIHLI 33


>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 415 YKYTEQYGNGTHAKAPKGLPRRCQQ 341
           YKY  + G+G  AK+ KG+  R  Q
Sbjct: 92  YKYIGEIGHGVSAKSRKGIVERAAQ 116


>U53335-7|AAA96172.2|  150|Caenorhabditis elegans Hypothetical
           protein C55C3.2 protein.
          Length = 150

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 9/38 (23%), Positives = 23/38 (60%)
 Frame = +1

Query: 13  CVYTGLHYLRKRRETDKMSLLTSLTQHYRLSINIQISM 126
           CV++  H+  + +    ++LL  L +H+  ++++ IS+
Sbjct: 37  CVFSDQHFNSEIKANKCVNLLNELIEHFFFTLSVSISV 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,464,029
Number of Sequences: 27780
Number of extensions: 136200
Number of successful extensions: 313
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)