Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L07
(500 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86... 172 1e-43
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880... 171 3e-43
04_04_0944 - 29557360-29557485,29557570-29557698,29557875-295579... 29 2.8
05_05_0042 - 21798255-21798871,21799400-21799777,21799861-218008... 27 6.4
05_04_0020 - 17199627-17199947,17200129-17200203,17200301-172003... 27 6.4
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 27 6.4
11_08_0005 + 27536091-27536761,27539697-27539890,27540097-275402... 27 8.5
>06_01_0110 -
866728-866952,867035-867193,867315-867448,868225-868333
Length = 208
Score = 172 bits (419), Expect = 1e-43
Identities = 81/154 (52%), Positives = 108/154 (70%), Gaps = 1/154 (0%)
Frame = +3
Query: 42 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRC 221
M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRP+V+C
Sbjct: 1 MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60
Query: 222 PTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYR 401
T++Y+ K RAGRGFTL E++A+G+ FA TIGI+VD RR+N+S+E LQ NVQRLK Y+
Sbjct: 61 QTLKYNMKSRAGRGFTLEELKAAGIPKKFAPTIGISVDHRRKNRSLEGLQANVQRLKTYK 120
Query: 402 ARLILFP-KGKKVLKGEANEEERKLATQLRGPLM 500
A+L++FP + +KV G++ EE ATQ++G M
Sbjct: 121 AKLVIFPRRARKVKAGDSTPEELATATQVQGDYM 154
>03_05_0108 -
20887146-20887370,20887460-20887618,20887930-20888063,
20888597-20888705
Length = 208
Score = 171 bits (416), Expect = 3e-43
Identities = 80/154 (51%), Positives = 108/154 (70%), Gaps = 1/154 (0%)
Frame = +3
Query: 42 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRC 221
M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRP+V+C
Sbjct: 1 MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60
Query: 222 PTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYR 401
T++Y+ K RAGRGFTL E++A+G+ +A TIGI+VD RR+N+S+E LQ NVQRLK Y+
Sbjct: 61 QTLKYNMKSRAGRGFTLEELKAAGIPKKYAPTIGISVDHRRKNRSLEGLQANVQRLKTYK 120
Query: 402 ARLILFP-KGKKVLKGEANEEERKLATQLRGPLM 500
A+L++FP + +KV G++ EE ATQ++G M
Sbjct: 121 AKLVIFPRRARKVKAGDSTAEELATATQVQGDYM 154
>04_04_0944 -
29557360-29557485,29557570-29557698,29557875-29557917,
29558321-29558400,29558493-29558804
Length = 229
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 27 GKSFKMGKGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNR 155
GKS +MG GN IP+ H ++ R + + + KQN+
Sbjct: 183 GKSIRMGSGNRRIPSAHESREKLRNSDIFKRRLDEPNDEKQNK 225
>05_05_0042 -
21798255-21798871,21799400-21799777,21799861-21800820,
21800918-21800957,21801471-21801766,21802696-21802774,
21803013-21803100,21803189-21803273,21803364-21803625,
21803720-21805027,21806187-21806393,21807288-21807519,
21808267-21808353,21808427-21808735,21808879-21808957,
21809788-21809867,21809952-21810029,21810744-21810831,
21811102-21811241,21811342-21811415,21812043-21812125,
21812403-21812516,21813975-21814136,21814377-21814641
Length = 2036
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 21 RSGKSFKMGKGNNMIPNGHFHKDWQRFVKTWFN 119
RS K+ + NN++ + H H + F+ TW N
Sbjct: 232 RSSKAEQKDALNNIVLSAHLHLQSEGFLSTWTN 264
>05_04_0020 -
17199627-17199947,17200129-17200203,17200301-17200384,
17200483-17200562,17201354-17201508,17202602-17203215
Length = 442
Score = 27.5 bits (58), Expect = 6.4
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -2
Query: 367 NDSTDLLRLRGSTAIPIVLAKEGFNPEALISRRVNPLPARTFV**RT-VGQRTTGLR 200
+ ST GSTA LA+ F+ E +SRR LPAR FV + +G + GLR
Sbjct: 73 SSSTPAAAAAGSTAAN-PLAR--FSVEPAVSRRQQQLPARQFVGGKVPLGLKRKGLR 126
>01_01_1166 +
9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 357 VESLQINVQRLKEYRARLILFPKGKKVLKGEANEEERKLATQL 485
++SL+ VQR+ E R R +L P G ++E R A +
Sbjct: 182 IQSLRTRVQRVSERRLRYMLNPTGSLSSSNYIDQERRLSALNI 224
>11_08_0005 +
27536091-27536761,27539697-27539890,27540097-27540255,
27540385-27541493
Length = 710
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 408 DELYIPSTFEH*SVMIPLICCVYVGQQQYQLFWQKKGSIQKPL 280
DEL + S +H +V+ L CC+ + L + GS++K L
Sbjct: 472 DELRVQSLIQHENVVTLLGCCMETEEPTLILEFIPNGSLEKKL 514
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,610,889
Number of Sequences: 37544
Number of extensions: 233179
Number of successful extensions: 489
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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