Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L07
(500 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br... 161 3e-40
At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br... 161 3e-40
At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D) 156 7e-39
At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S ... 144 3e-35
At5g12280.1 68418.m01444 hypothetical protein 28 3.1
At1g62250.2 68414.m07023 expressed protein 28 3.1
At1g62250.1 68414.m07022 expressed protein 28 3.1
At5g08170.1 68418.m00954 porphyromonas-type peptidyl-arginine de... 28 4.1
At5g10050.1 68418.m01164 short-chain dehydrogenase/reductase (SD... 27 5.4
At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical t... 27 7.1
At2g01930.2 68415.m00128 expressed protein 27 7.1
At2g01930.1 68415.m00127 expressed protein 27 7.1
At3g62710.1 68416.m07044 glycosyl hydrolase family 3 protein exh... 27 9.4
At3g47010.1 68416.m05105 glycosyl hydrolase family 3 protein bet... 27 9.4
At3g07890.1 68416.m00964 RabGAP/TBC domain-containing protein si... 27 9.4
>At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 161 bits (390), Expect = 3e-40
Identities = 77/149 (51%), Positives = 102/149 (68%), Gaps = 1/149 (0%)
Frame = +3
Query: 48 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 227
K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRPVV T
Sbjct: 2 KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 228 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 407
++Y+ KVR G+GFTL E++A+G+ A TIGIAVD RR+N+S+E LQ NVQRLK Y+ +
Sbjct: 62 LKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTK 121
Query: 408 LILFP-KGKKVLKGEANEEERKLATQLRG 491
L++FP + +KV G++ EE ATQ++G
Sbjct: 122 LVIFPRRARKVKAGDSTPEELANATQVQG 150
>At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 161 bits (390), Expect = 3e-40
Identities = 77/149 (51%), Positives = 102/149 (68%), Gaps = 1/149 (0%)
Frame = +3
Query: 48 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 227
K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRPVV T
Sbjct: 2 KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 228 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 407
++Y+ KVR G+GFTL E++A+G+ A TIGIAVD RR+N+S+E LQ NVQRLK Y+ +
Sbjct: 62 LKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTK 121
Query: 408 LILFP-KGKKVLKGEANEEERKLATQLRG 491
L++FP + +KV G++ EE ATQ++G
Sbjct: 122 LVIFPRRARKVKAGDSTPEELANATQVQG 150
>At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)
Length = 206
Score = 156 bits (379), Expect = 7e-39
Identities = 75/152 (49%), Positives = 103/152 (67%), Gaps = 1/152 (0%)
Frame = +3
Query: 48 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 227
K NN+IP+ HF K WQ +VKTWFNQPAR+ RR+ R LRPVV T
Sbjct: 2 KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 228 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 407
++Y+ KVRAG+GFTL E++ +G+ A TIGI+VD RR+N+S+E LQ NVQRLK Y+A+
Sbjct: 62 LKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAK 121
Query: 408 LILFP-KGKKVLKGEANEEERKLATQLRGPLM 500
L++FP + ++V G++ EE ATQ++G M
Sbjct: 122 LVVFPRRSRQVKAGDSTPEELANATQVQGDYM 153
>At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S
ribosomal protein L13 (BBC1), Arabidopsis thaliana,
gb:X75162
Length = 206
Score = 144 bits (349), Expect = 3e-35
Identities = 69/148 (46%), Positives = 99/148 (66%), Gaps = 1/148 (0%)
Frame = +3
Query: 48 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 227
K NN+IPNGHF K W+ +VKT FNQPA + RR+ R +RPVV T
Sbjct: 2 KHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQT 61
Query: 228 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 407
+ Y+ KVRAG+GFTL E++A+G+ A TIGI+VD R+N+S+E Q NVQRLK Y+A+
Sbjct: 62 LTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAK 121
Query: 408 LILFPKGKKVLK-GEANEEERKLATQLR 488
L++FP+ + +K G++ ++E ATQ++
Sbjct: 122 LVIFPRCARTVKVGDSAQQELANATQVQ 149
>At5g12280.1 68418.m01444 hypothetical protein
Length = 419
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 354 SVESLQINVQRLKEYRARLILFPKGKKVLKGEA 452
+V+SL NV LKE + I FP K+ L+G+A
Sbjct: 362 TVQSLSENVASLKEKISGEIQFPTNKQKLRGKA 394
>At1g62250.2 68414.m07023 expressed protein
Length = 223
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 231 RYHTKVRAGRGFTLREIRASGLNPSFARTIGIA-VDPRRRNKSVESLQINVQRLKEY 398
RY T + G G TL+E ++G+N A +G D R+ +++ + ++R++ Y
Sbjct: 98 RYRTVIGRGEGETLKEFISAGVN---AYALGCTDEDLRKELMAMKDSGLEIERMENY 151
>At1g62250.1 68414.m07022 expressed protein
Length = 267
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 231 RYHTKVRAGRGFTLREIRASGLNPSFARTIGIA-VDPRRRNKSVESLQINVQRLKEY 398
RY T + G G TL+E ++G+N A +G D R+ +++ + ++R++ Y
Sbjct: 98 RYRTVIGRGEGETLKEFISAGVN---AYALGCTDEDLRKELMAMKDSGLEIERMENY 151
>At5g08170.1 68418.m00954 porphyromonas-type peptidyl-arginine
deiminase family protein contains Pfam PF04371:
Porphyromonas-type peptidyl-arginine deiminase
Length = 383
Score = 27.9 bits (59), Expect = 4.1
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 1/99 (1%)
Frame = +3
Query: 87 DWQRFVKTWFNQPARRHRRKQNRI-XXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAGRG 263
+W +TW P R+ + N + PV C + R
Sbjct: 18 EWDSHAQTWIGWPERQDNWRHNALPAQRVFADVAKAISKFEPVTVCASPAQWENARKQLP 77
Query: 264 FTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINV 380
+R + S +N S+ R G R+R + SL N+
Sbjct: 78 EDIRVVEMS-MNDSWFRDSGPTFIVRKRPVKLSSLNRNI 115
>At5g10050.1 68418.m01164 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198 short
chain dehydrogenase/reductase SDR family
Length = 279
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 307 KEGFNPEALISRRVNPLPARTF 242
+E A IS+R+NP PA TF
Sbjct: 210 EEAIRERAFISQRMNPTPAETF 231
>At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical to
enhancer of zeste-like protein 1(EZA1) (GI:4185507)
[Arabidopsis thaliana]; similar to polycomb group
[Arabidopsis thaliana] GI:1903019 (curly leaf); contains
Pfam profile PF00856: SET domain
Length = 856
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2
Query: 242 KSSCRQRIYPT*NKGFWIEPFFCQNNWYCC 331
KS CR R P G +P C+N W C
Sbjct: 651 KSQCRSRQCPCFAAGRECDPDVCRNCWVSC 680
>At2g01930.2 68415.m00128 expressed protein
Length = 283
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 21 RSGKSFKMGKGNNMI--PNGHFHKDWQRFVKTWFNQP 125
R+ K F G+ +N++ NG +H Q +W NQP
Sbjct: 34 RNTKPFLPGRESNLMIGSNGSYHSREQDMNYSWINQP 70
>At2g01930.1 68415.m00127 expressed protein
Length = 283
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 21 RSGKSFKMGKGNNMI--PNGHFHKDWQRFVKTWFNQP 125
R+ K F G+ +N++ NG +H Q +W NQP
Sbjct: 34 RNTKPFLPGRESNLMIGSNGSYHSREQDMNYSWINQP 70
>At3g62710.1 68416.m07044 glycosyl hydrolase family 3 protein
exhydrolase II - Zea mays, EMBL:AF064707
Length = 650
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 267 TLREIRASGLNPSFARTIGIAVDPR 341
T +E+RA+G+ +FA + + DPR
Sbjct: 171 TAQEVRATGVAQAFAPCVAVCRDPR 195
>At3g47010.1 68416.m05105 glycosyl hydrolase family 3 protein
beta-D-glucan exohydrolase, Nicotiana tabacum,
TREMBL:AB017502_1
Length = 581
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 267 TLREIRASGLNPSFARTIGIAVDPR 341
T EIRASG++ +FA + + DPR
Sbjct: 109 TALEIRASGVHWTFAPCVAVLGDPR 133
>At3g07890.1 68416.m00964 RabGAP/TBC domain-containing protein
similar to plant adhesion molecule 1 [Arabidopsis
thaliana] GI:3511223; contains Pfam profile PF00566: TBC
domain
Length = 400
Score = 26.6 bits (56), Expect = 9.4
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = -1
Query: 155 SILLSTMTTSWLIKPCLHKSLPILMEMAIWYHI 57
S+ LST+T + +K + K +P ++ +W+ +
Sbjct: 97 SLKLSTLTNAITLKRLIRKGIPPVLRPKVWFSL 129
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,294,480
Number of Sequences: 28952
Number of extensions: 192009
Number of successful extensions: 426
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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