Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L06
(454 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 31 0.11
SPAC23C11.17 |||mitochondrial inner membrane protein involved in... 29 0.44
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 28 0.77
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 27 1.3
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 27 1.8
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 26 2.3
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 2.3
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c... 26 2.3
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 2.3
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 26 3.1
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple... 26 3.1
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 26 3.1
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 26 3.1
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 4.1
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 25 4.1
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 25 4.1
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 25 4.1
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 25 5.4
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 25 5.4
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 25 5.4
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 25 5.4
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 25 7.2
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1... 25 7.2
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 7.2
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 24 9.5
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 24 9.5
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 24 9.5
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 30.7 bits (66), Expect = 0.11
Identities = 19/105 (18%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Frame = +2
Query: 2 EADIREISRELQQSTDEGKRETYFVTTPKLAMASNGPNQTHSEDIRNRVNDKPGFSEENS 181
E ++E +++Q+ E ++ + ++++ + Q+ + ++R K +E+S
Sbjct: 900 ERQLQEERQKMQEEVLEWRKSQQKASEDDMSLSDDEEKQSGKKKKKDRKKRKSKSKQESS 959
Query: 182 KH-ISTKPDVSKSTNESKVTTEKATVNINGTEVTFDERSSFTGDQ 313
+S ++ S +K + + E TFD+ S G+Q
Sbjct: 960 DSGVSEDDEIPLSDARNKTKKRRVNRRVISEEYTFDQDSDAEGNQ 1004
>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
potassium ion transport|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 28.7 bits (61), Expect = 0.44
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 170 EENSKHISTKPDVSKSTNESKVTTEKATVNINGTE 274
EE ++H++ PD++K E T K V+ E
Sbjct: 442 EEEAEHVAEHPDLAKKQTEENKATSKPAVSAKSPE 476
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 27.9 bits (59), Expect = 0.77
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +2
Query: 20 ISRELQQSTDEGKRETYFVTTPKLAMASNGPNQTHSEDIRNRVNDKPGFSE 172
I + S + F T+ KL + N + +S D+R ++ D+P F +
Sbjct: 37 IEKNHSSSVTASQASLAFNTSEKLFVNENAEERKNSRDLRKQLPDRPKFKK 87
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 27.1 bits (57), Expect = 1.3
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +2
Query: 74 VTTPKLAMASNGPNQTHSEDIRNRVNDKPGFSEENSKHISTKPDVSKST---NESKVTTE 244
+ PK++ +NG + HSED+ + N +K TK +K++ NE ++T
Sbjct: 704 IEIPKMSGRANGMHNFHSEDVTGQSNH--ALPNSVTKKNGTKQPYTKNSLPFNE-RITRS 760
Query: 245 KATVN 259
KA N
Sbjct: 761 KAKKN 765
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 26.6 bits (56), Expect = 1.8
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = -1
Query: 364 LVFFNTFPVYPYVPRRALVTSE*RSLIKCYFCTINIY 254
L+ N FP+ Y+ A ++ CY C++ +Y
Sbjct: 355 LIIGNIFPIVGYILLLACQNNKSVLYFACYLCSVGVY 391
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 26.2 bits (55), Expect = 2.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 128 EDIRNRVNDKPGFSEENSKHISTKPDVSKSTNE 226
+DI N++ DKP +S ++ + T+PD S +
Sbjct: 586 DDILNKIADKPLYSPDDWELYFTRPDGKHSMTD 618
>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 26.2 bits (55), Expect = 2.3
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = -1
Query: 439 FRYKSLKLVKYGFYPNNYLTLSLSYLVFFNTFPVYPYVPRRALVTSE*RSLIKCY 275
+ +K+ + F + + + L ++F NT YV + AL R L KC+
Sbjct: 8 YSHKNFNVTNNNFQVSCFNPILLKIILFLNTIVCIFYVYKIALCNEYIRFLAKCF 62
>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 2.3
Identities = 16/58 (27%), Positives = 23/58 (39%)
Frame = +2
Query: 146 VNDKPGFSEENSKHISTKPDVSKSTNESKVTTEKATVNINGTEVTFDERSSFTGDQCP 319
V D+P K TKP + S K+T+ N G+ + F+ D CP
Sbjct: 250 VTDQPSVPPATEKDYVTKPRIEASIRIKKITSLSGLSNATGSAL-FNS-LLLVADSCP 305
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 26.2 bits (55), Expect = 2.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -1
Query: 412 KYGFYPNNYLTLSLSYLVFFNTFP 341
+YG+YP +Y S +Y F ++P
Sbjct: 97 RYGYYPQSYANQSYTYGNNFGSYP 120
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 3.1
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Frame = +2
Query: 8 DIREISRELQQSTDEGKRETYFVTTPKLAMASNGPNQT---HSEDIRNRVNDKPGFSEEN 178
D+ E + + ++ +G + P+ + N NQT ++ R + K S +
Sbjct: 440 DLEEDQNKSKIASKDGTNLKEINSVPEFS-DENVINQTGPAKKTPVQRRKDGKFAKSTKR 498
Query: 179 SKHISTKPDVSKSTNESKVTTEKATVNIN 265
K S KPD ES V +KA N+N
Sbjct: 499 KKQKSLKPDT--ENQESSVKNKKAKSNVN 525
>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 313
Score = 25.8 bits (54), Expect = 3.1
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 125 SEDIRNRVNDKPGF-SEENSKHISTKPDVSKSTNESKVTTEKATVNINGTEV 277
SE+ N+KP S+EN++ S D + + E + EK VN+ V
Sbjct: 258 SEEEDAETNEKPSTTSDENNQPQSPPSDNASNPEEDVMNMEKEIVNLTPMSV 309
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.8 bits (54), Expect = 3.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 345 FPFILTYPVGHWSPVNDDLSSNVTSVPLIFTV 250
FP IL YP+ + S +S N T + L+ TV
Sbjct: 246 FPTILLYPLVYQSDFVPSVSENCTPLELLKTV 277
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 25.8 bits (54), Expect = 3.1
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 62 ETYFVTTPKLAMASNGP--NQTHSEDIRNRVNDKPGFSEENSKHISTKPDVSKSTNESK 232
E Y + P+ + ++ P + S N +++KPGF+ S++ T + + S + K
Sbjct: 669 EQYNLERPEYSKTASRPQFSDISSTASSNSLSNKPGFAHSESRNYHTHDEDNSSDDNHK 727
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 25.4 bits (53), Expect = 4.1
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -2
Query: 297 DDLSSNVTS-VPLIFTVAFSVVTLLSFVDFDTSGFVDMCFEFSSLKPGLS 151
D +S +T + + FT+ +VV ++ ++DF+ V + F + GLS
Sbjct: 321 DSVSLLITEPIVVCFTLYLTVVYIIGYIDFEGYPIVFAKYSFDQGEIGLS 370
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 25.4 bits (53), Expect = 4.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 284 DERSSFTGDQCPTGYVRI 337
D SSF +QCP G V I
Sbjct: 758 DHASSFASEQCPEGIVAI 775
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.4 bits (53), Expect = 4.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 285 SNVTSVPLIFTVAFSVVTLLSFVDFDTSGF 196
S+ TS+P I + S V+ SF +SGF
Sbjct: 145 SSTTSIPSISSTISSSVSTSSFTSLSSSGF 174
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 25.4 bits (53), Expect = 4.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 166 EARFVVNTVSDVFGMC 119
E RF+VN + D+ G+C
Sbjct: 514 EKRFLVNVIKDLLGLC 529
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +3
Query: 36 NNLRTKGNAKHIL*PHQNSRWLQTDLIKHIPKTSETVLTTN 158
N+ ++ +AKH PH++S++ T L +S T ++++
Sbjct: 128 NSTTSQASAKHSAVPHRSSQFQSTTLTPSTTDSSSTDVSSS 168
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 25.0 bits (52), Expect = 5.4
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 164 FSEENSKHISTKPDVSKSTNESKVTTEKATVNI-NGTEVTFDERSSFTGDQCPTGYVRIN 340
FS +N+++ ST K++N T V + NGT+ + + S + + IN
Sbjct: 386 FSGQNAENGSTNLP-QKTSNSDMPTANSMPVKLENGTDYSTSQEPSSNANNQSSPTSSIN 444
Query: 341 GKCVEE 358
GK E
Sbjct: 445 GKASSE 450
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -2
Query: 189 MCFEFSSLKPGLSLTRFLMSSECV*LGPFEAIASFGVVTKYV 64
MC SSL G++ ++ + + + PF+ +S + YV
Sbjct: 1 MCISSSSLLCGINSLKYASNRVGILIPPFQTASSLNIFRPYV 42
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 25.0 bits (52), Expect = 5.4
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +2
Query: 158 PGFSEENSKH--ISTKPDVS-KSTNESKVTT-EKATVNINGTEVTFDERSSFTGDQCPTG 325
PG S + + +KP V K NE+ E++T ++ DE+ S+T ++ TG
Sbjct: 82 PGMSADQISQLKVGSKPTVELKQENENTYQIREESTSSVR--VFLPDEQGSYTSNEIKTG 139
Query: 326 YV 331
YV
Sbjct: 140 YV 141
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 24.6 bits (51), Expect = 7.2
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +2
Query: 20 ISRELQQSTDEGKRETYFVTT--PKLAMASNGPNQTHSEDIRNRVNDKPGFSEENS 181
+ ++L + +E K+ ++ KL + NG +++SE + P FS S
Sbjct: 37 VHQQLHSNIEESKKSIIYLEERLEKLKLRKNGVRKSNSEKPSVGIEKNPSFSTTKS 92
>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 588
Score = 24.6 bits (51), Expect = 7.2
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 96 IASFGVVTKYVSRFPSSVDCCNSRLISLMS 7
I +GV+T VS FP S+ SR++SL S
Sbjct: 197 ITGYGVLTFLVSMFPPSL----SRILSLFS 222
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 24.6 bits (51), Expect = 7.2
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Frame = +2
Query: 65 TYFVT----TPKLAMASNGPNQTHSEDIRNRVNDKPGFSEENSKHISTKPDVSKSTNESK 232
+YF+T TP + +S+ + + S + + S +SK S+ SKS++ S
Sbjct: 144 SYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSS 203
Query: 233 VTTEKATVNINGTEVTFDERSSFTGDQCP 319
+++ + + + SSF P
Sbjct: 204 SSSKSSASPSSSKSSSKFSSSSFITSTTP 232
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 24.2 bits (50), Expect = 9.5
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = +3
Query: 87 NSRWLQTDLIKHIPKTSETVLTTNRASVKKIQNTY 191
NS W Q + H+ + + +TT +++K+ Y
Sbjct: 197 NSTWEQQQKLDHVRRIYQRAITTPIHNIEKLWRDY 231
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 24.2 bits (50), Expect = 9.5
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +2
Query: 80 TPKLAMASNGPNQTHSEDIRNRVNDKPGFSEENSK 184
T ++ P Q S+D + V +KP SE+ K
Sbjct: 159 TSNAVVSEVNPQQQKSQDSSSFVTEKPASSEKEDK 193
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 24.2 bits (50), Expect = 9.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 191 STKPDVSKSTNESKVTTEKATVNINGT 271
S KP S +T S ++K +I+GT
Sbjct: 369 SNKPSASSTTKSSNSKSKKKVTSISGT 395
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,732,975
Number of Sequences: 5004
Number of extensions: 33016
Number of successful extensions: 148
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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