Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L06
(454 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0013 + 7362056-7362471,7363235-7364081,7364272-7364758,736... 33 0.14
11_01_0609 - 4865229-4865510,4865981-4866144,4866219-4866320,486... 30 0.76
09_04_0163 - 15249816-15249920,15250032-15250163,15250463-152506... 29 1.3
01_07_0256 - 42328795-42329172,42330245-42330379,42330783-423310... 29 2.3
01_06_0358 - 28677781-28677901,28678327-28678430,28678542-286786... 29 2.3
11_01_0681 - 5568312-5568328,5569057-5569213,5569321-5569482,556... 28 4.0
12_02_0128 - 13969118-13969222,13969329-13969460,13969558-139696... 27 5.3
07_01_0893 + 7484598-7484744,7484837-7484902,7494387-7494530,749... 27 5.3
01_05_0519 - 22897277-22897986,22898126-22898225 27 5.3
11_08_0089 - 28288129-28288832,28290702-28290831,28291563-282918... 27 7.1
06_01_0221 + 1690978-1692171,1692265-1692276 27 7.1
03_06_0553 - 34682581-34683183,34683687-34683842,34684154-346842... 27 7.1
02_03_0404 + 18648632-18648669,18649319-18649379,18649449-186494... 27 7.1
07_01_0070 + 515247-515397,516198-516265,516360-518456,518750-51... 27 9.3
03_05_0226 - 22115285-22115404,22115477-22116661,22117037-221178... 27 9.3
03_01_0581 + 4310136-4310186,4310940-4311144,4311245-4311410,431... 27 9.3
>05_03_0013 +
7362056-7362471,7363235-7364081,7364272-7364758,
7365062-7365126,7365275-7365643
Length = 727
Score = 32.7 bits (71), Expect = 0.14
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +2
Query: 20 ISRELQQSTDEGKRETYFVTTPKLAMAS---NGPNQTHSEDIRNRVNDKPGFSEENSKHI 190
I R +Q+T GKR+ + PK A +S NG N + E + S E+S+H
Sbjct: 128 IRRYTKQNTQFGKRKVFQKHIPKEASSSSSENGENSSDGESDSSGECSDDSDSSESSEHA 187
Query: 191 STKPDVSKSTN 223
+ P V ++++
Sbjct: 188 HSAPSVQETSS 198
>11_01_0609 -
4865229-4865510,4865981-4866144,4866219-4866320,
4866674-4867217
Length = 363
Score = 30.3 bits (65), Expect = 0.76
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 14/123 (11%)
Frame = +2
Query: 32 LQQSTDEGKRETYFVTTPKLAMA---SNGPNQTHSEDIRNRVNDK----PGFSEENSKHI 190
++ +DEG T +TT K+A A +NG + D+ + D+ SE N
Sbjct: 98 IKTESDEGGMVTAAITTEKMAPALKENNGITGKRTRDVDYLMEDRVVVFKKSSEANVCES 157
Query: 191 STKPDVSKSTNESKVTTEKATVNINGTEVTFDERSSFTGDQCP-------TGYVRINGKC 349
S + S +SKVT+ + G+ + DE +S + P +G V G+C
Sbjct: 158 SRRKRAGASAGKSKVTSTSHN-STRGSSCSSDEDNSSSKSPNPPFLMRFLSGEVSRRGRC 216
Query: 350 VEE 358
V +
Sbjct: 217 VSK 219
>09_04_0163 -
15249816-15249920,15250032-15250163,15250463-15250629,
15251259-15251448,15252530-15252661,15253275-15253382,
15253513-15253608,15253702-15253809,15253917-15254089,
15255026-15255401,15255887-15256030,15256125-15256799,
15256917-15256982,15257082-15257249
Length = 879
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +3
Query: 36 NNLRTKGNAKHIL*PHQNSRWLQTDLIKHIPKTSETVLTTNRASVKKIQNT 188
NN+ GNA + H N+ TD+ +PKT +T T + I NT
Sbjct: 421 NNVAHNGNAPPLEQNHPNN----TDVCSQLPKTPQTKSTAEHKTKSNINNT 467
>01_07_0256 -
42328795-42329172,42330245-42330379,42330783-42331033,
42331290-42331341,42331619-42331647,42331812-42332105,
42332229-42332378,42333915-42334405,42334513-42334613,
42334941-42335037,42335882-42335950,42336036-42336122,
42336423-42336494,42336795-42336863,42337784-42337858,
42338230-42338301,42338378-42338449,42338533-42338676,
42339106-42339177,42339294-42339365,42339804-42339954,
42340204-42340297
Length = 1008
Score = 28.7 bits (61), Expect = 2.3
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 218 TNESKVTTEKATVNINGTEVTFDERSSFTGDQCPTGYVRI 337
TN S + A V I TE F +SSF ++CP+ YVR+
Sbjct: 335 TNLSNPLSPPANVTILRTENGF-LKSSFMEEKCPSCYVRV 373
>01_06_0358 -
28677781-28677901,28678327-28678430,28678542-28678625,
28679221-28679265,28679523-28679594,28679721-28679759,
28679966-28680061,28680492-28680566,28681717-28681764,
28681888-28681971,28682141-28682341,28682394-28682561,
28683232-28683372,28683470-28683517,28683845-28684087,
28684184-28684297,28685134-28685163,28685361-28685951,
28686033-28686620,28686744-28686863,28687764-28687938,
28688397-28688562,28688653-28688755,28689227-28689319,
28690759-28690918,28691754-28691872
Length = 1275
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 108 DLIKHIPKTSETVLTTNRASVKKIQNT 188
+ +KH+P+TS + T+N KKIQ++
Sbjct: 432 ETMKHLPETSILLATSNNGQQKKIQSS 458
>11_01_0681 -
5568312-5568328,5569057-5569213,5569321-5569482,
5569524-5570546
Length = 452
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = -1
Query: 379 LSLSYLVFFNTFPVYPYVPRRALVTSE*RSLI----KCYFCTINIYCCLLCCHF 230
LSL + + N PV+ +P + +T + ++ +C CT C C F
Sbjct: 282 LSLGLVNYMNQSPVFEGIPSGSFITGQEVGVVSSGTRCMLCTYAFSCTASTCAF 335
>12_02_0128 -
13969118-13969222,13969329-13969460,13969558-13969671,
13971843-13971941,13972035-13972171,13972505-13972598,
13973248-13973355,13973442-13973537,13973673-13973845,
13974818-13975172,13975308-13975442,13975524-13975667,
13975762-13976436,13976552-13976617,13976710-13976877
Length = 866
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +3
Query: 36 NNLRTKGNAKHIL*PHQNSRWLQTDLIKHIPKTSETVLTTNRASVKKIQNT 188
+N+ GNA + +QN+ TD+ +PKT +T T + I NT
Sbjct: 459 SNVAHNGNAPPLEQKNQNN----TDVCSQLPKTPQTKSTAEHKTKSNINNT 505
>07_01_0893 +
7484598-7484744,7484837-7484902,7494387-7494530,
7494860-7495235,7495904-7496017,7496282-7496454,
7496562-7496669,7497311-7497377,7497791-7497904,
7498121-7498257,7498727-7498813,7498962-7498986,
7499044-7499266,7499770-7499947,7500039-7500152,
7500249-7500380,7500488-7500588,7500720-7500933
Length = 839
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +3
Query: 36 NNLRTKGNAKHIL*PHQNSRWLQTDLIKHIPKTSETVLTTNRASVKKIQNT 188
+N+ GNA + H N+ TD+ +PKT +T T + I NT
Sbjct: 189 SNVAHNGNAPPLEQNHPNN----TDVCSQLPKTPQTKSTVEHETKSNINNT 235
>01_05_0519 - 22897277-22897986,22898126-22898225
Length = 269
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/63 (26%), Positives = 23/63 (36%)
Frame = +2
Query: 2 EADIREISRELQQSTDEGKRETYFVTTPKLAMASNGPNQTHSEDIRNRVNDKPGFSEENS 181
+ D + R Q S E K E T P A + H E+ + R K S E
Sbjct: 132 KTDSDQSERRTQLSAREKKEEPPKATAPAAAPPQPAARERHDEEEKARAEHKARLSREAD 191
Query: 182 KHI 190
+ I
Sbjct: 192 RRI 194
>11_08_0089 -
28288129-28288832,28290702-28290831,28291563-28291856,
28292000-28292098,28292199-28292285,28292524-28292805
Length = 531
Score = 27.1 bits (57), Expect = 7.1
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -1
Query: 283 KCYFCTINIYCCLLCCH 233
+CY I YCC L CH
Sbjct: 60 RCYALQIRDYCCYLQCH 76
>06_01_0221 + 1690978-1692171,1692265-1692276
Length = 401
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +3
Query: 78 PHQNSRWLQTDLIKHIPKTSETVLTTNRASVKKIQNTYQRNLM 206
P + W++ +++ HIP TS T +T + + R+L+
Sbjct: 92 PSAAAAWVRANILPHIPATSITAVTVGNEVLTGNDSAMLRSLL 134
>03_06_0553 -
34682581-34683183,34683687-34683842,34684154-34684272,
34684691-34684793,34685027-34685299,34685411-34685602,
34686691-34687029
Length = 594
Score = 27.1 bits (57), Expect = 7.1
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Frame = +2
Query: 74 VTTPKLAMASNGPNQTHSEDIRNRVNDKPGFSEENSKH---ISTKPDV--SKSTNESKVT 238
+T P S NQ ++ + N D S S+ +S+ +V +KS S
Sbjct: 403 ITQPVTNGLSTDCNQHQTDLVANTEQDFSAVSVVTSEEKIVLSSNDNVISTKSVAGSGFA 462
Query: 239 TEKATVNINGTEVTFDERSSFTGDQCP 319
+ VNING+ T E+SS TG + P
Sbjct: 463 AQ-GDVNINGSLDTEQEQSSLTGQEEP 488
>02_03_0404 +
18648632-18648669,18649319-18649379,18649449-18649476,
18649787-18649861,18649929-18649984,18650085-18650129,
18650224-18650475,18650586-18650680,18651114-18651204,
18651356-18651466,18651556-18651750,18651827-18652018
Length = 412
Score = 27.1 bits (57), Expect = 7.1
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Frame = +2
Query: 74 VTTP--KLAMASNGPNQ--TH---SEDIRNRVNDKPGFSEENSKHISTKPDVSKSTNESK 232
+ TP K+A+ S Q TH SED + + KP ++EN S +T+ESK
Sbjct: 109 IVTPGVKVAIISKSAAQSKTHTQSSEDTSQKHSTKPPSTKENKVEAKPPKVESSTTHESK 168
Query: 233 VTT 241
+T+
Sbjct: 169 LTS 171
>07_01_0070 +
515247-515397,516198-516265,516360-518456,518750-518900,
519883-520638,520990-521164,521303-521387
Length = 1160
Score = 26.6 bits (56), Expect = 9.3
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = +2
Query: 17 EISRELQQSTDEGKRETYFVTTPKLAMASNGPNQTHSEDIRNRVNDKPGFSEENSKHIST 196
EISR+ Q+ST + E ++ +NG H RV K SE ++
Sbjct: 611 EISRK-QKSTSQLMTENS-ARRQQMQRENNGSLLKHKNSTSPRVQQKKPDSERRARPPIP 668
Query: 197 KPDVSKSTNES 229
PD SK+ +S
Sbjct: 669 SPDSSKNQRQS 679
>03_05_0226 - 22115285-22115404,22115477-22116661,22117037-22117861,
22118029-22118106,22118370-22118420,22118510-22118581,
22118666-22118667,22119453-22119557,22119668-22119749,
22120178-22120227,22120514-22120567,22121084-22121164,
22121567-22121656,22121884-22121964,22122304-22122544
Length = 1038
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +2
Query: 167 SEENSKHISTKPDVSKSTNESKVTTEKATVNINGTEV---TFDERSSFTGDQCPTGYVRI 337
+EEN++ I PD++KS + + EV ++ +R+ T CP ++
Sbjct: 924 TEENNEEILIDPDIAKSKGRPSQRYKSFREELQSKEVYHCSYCQRTDHTFPTCPLKHIEF 983
Query: 338 N 340
+
Sbjct: 984 D 984
>03_01_0581 +
4310136-4310186,4310940-4311144,4311245-4311410,
4312035-4312257,4312891-4312967,4313091-4313278,
4313363-4313457,4313674-4313807,4313914-4314024,
4314304-4314619,4314919-4315040,4315183-4315293,
4315824-4316012,4316105-4316263,4316449-4316530,
4317080-4317190
Length = 779
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 110 VRLKPSRVLVWLQNMFRVSLRP*IVATPD 24
V+ + S L+W Q R+++RP I+ PD
Sbjct: 279 VQHRGSIPLIWFQETSRLNIRPDIILKPD 307
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,101,037
Number of Sequences: 37544
Number of extensions: 173316
Number of successful extensions: 521
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -