Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L06
         (454 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   0.89 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   0.89 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   0.89 
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   6.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.3  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   8.3  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   8.3  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 0.89
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +2

Query: 53  GKRETYFVTTPKLAMASNGPNQTHSEDIRNRVNDKPGFSE 172
           G   T F   P +A+ S   +    ED+RN+ +   G+ +
Sbjct: 463 GSGSTNFNERPAVAVVSKSSSINKLEDLRNKKSCHSGYKD 502


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 0.89
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +2

Query: 53  GKRETYFVTTPKLAMASNGPNQTHSEDIRNRVNDKPGFSE 172
           G   T F   P +A+ S   +    ED+RN+ +   G+ +
Sbjct: 463 GSGSTNFNERPAVAVVSKSSSINKLEDLRNKKSCHSGYKD 502


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 0.89
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +2

Query: 53  GKRETYFVTTPKLAMASNGPNQTHSEDIRNRVNDKPGFSE 172
           G   T F   P +A+ S   +    ED+RN+ +   G+ +
Sbjct: 463 GSGSTNFNERPAVAVVSKSSSINKLEDLRNKKSCHSGYKD 502


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 14/70 (20%), Positives = 27/70 (38%)
 Frame = +2

Query: 62  ETYFVTTPKLAMASNGPNQTHSEDIRNRVNDKPGFSEENSKHISTKPDVSKSTNESKVTT 241
           E Y++  P+  +  +G   T +    +R+N K    E +         ++   N +    
Sbjct: 52  EIYYIYNPRYPLPYSGSKCTWTITSYHRINLKCSLVEFSENKNCNAGSLTVKKNFANKYC 111

Query: 242 EKATVNINGT 271
              T+NI  T
Sbjct: 112 GNITLNIEST 121


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 445  MEFRYKSLKLVKYGFYPNNYLTLSLSYLVFFNTF 344
            M+  +K +KL  +GF   + L  +   L+  N F
Sbjct: 1404 MDAHFKDVKLSDFGFSTEDILDTADEDLLINNVF 1437


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 400 YPNNYLTLSLSYLVFFNTFPV 338
           Y NNY  L  +Y++     PV
Sbjct: 109 YNNNYKKLYKNYIINIEQIPV 129


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 400 YPNNYLTLSLSYLVFFNTFPV 338
           Y NNY  L  +Y++     PV
Sbjct: 109 YNNNYKKLYKNYIINIEQIPV 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,668
Number of Sequences: 438
Number of extensions: 2499
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)