Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L06
(454 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g19260.1 68418.m02293 expressed protein various predicted pro... 29 1.1
At5g45510.1 68418.m05590 leucine-rich repeat family protein cont... 29 1.5
At3g05340.1 68416.m00582 pentatricopeptide (PPR) repeat-containi... 29 1.5
At1g77800.1 68414.m09059 PHD finger family protein contains Pfam... 29 1.5
At5g06700.1 68418.m00757 expressed protein strong similarity to ... 29 1.9
At1g59820.1 68414.m06735 haloacid dehalogenase-like hydrolase fa... 29 1.9
At1g02580.1 68414.m00209 maternal embryogenesis control protein ... 28 2.6
At4g08098.1 68417.m01317 hypothetical protein 27 4.5
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ... 27 5.9
At1g13170.1 68414.m01527 oxysterol-binding family protein simila... 27 5.9
At5g60750.1 68418.m07622 CAAX amino terminal protease family pro... 27 7.8
At1g64670.1 68414.m07331 hydrolase, alpha/beta fold family prote... 27 7.8
>At5g19260.1 68418.m02293 expressed protein various predicted
proteins
Length = 288
Score = 29.5 bits (63), Expect = 1.1
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +2
Query: 89 LAMASNGPNQTHSEDIRNRVNDKPGFS--EENSKHISTKPDVSKSTNESKVTT 241
LA+ S+ + +H+ED RNR +DK S ++S S + S S++ +K TT
Sbjct: 37 LALKSHLLDSSHAEDTRNRNDDKAAASPVSDSSGWSSLQSLSSGSSSSTKTTT 89
>At5g45510.1 68418.m05590 leucine-rich repeat family protein contains
leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 1222
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 254 VNINGTEVTFDERSSFTGDQCPTGYVRINGKCVEED 361
V+++GT+V E + T C + R +GKC E D
Sbjct: 935 VDLSGTQVETPELPADTKIHCLKRFTRADGKCFERD 970
>At3g05340.1 68416.m00582 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 658
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 87 NSRWLQTDLIKHIPKTSETVLTTNRASVKKIQNTYQ 194
NSRW+ L H+P TVL+ ++ +++ N YQ
Sbjct: 2 NSRWVIQKLTSHLPSCLSTVLSPSKILIRQSPN-YQ 36
>At1g77800.1 68414.m09059 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1423
Score = 29.1 bits (62), Expect = 1.5
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 182 KHISTKPDVSK-STNESKVTTEKATVNINGTEVTFDERSSFTGDQCPTGYVRINGKCVEE 358
KH P VS+ N SK + +T DE +SF + P GY + C++E
Sbjct: 1335 KHCIVSPSVSEDGDNGSKPKKQHVETFAKELVMTSDE-ASFKNRRLPKGYFYVPVDCLQE 1393
Query: 359 D 361
D
Sbjct: 1394 D 1394
>At5g06700.1 68418.m00757 expressed protein strong similarity to
unknown protein (emb|CAB82953.1)
Length = 608
Score = 28.7 bits (61), Expect = 1.9
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +2
Query: 113 NQTHSEDIRNRVNDKPGFSEENSKH--ISTKPDVSKSTNESKVTTEKATVNINGT 271
N T I N N P S H +S K + S N+S+ T + TVN N T
Sbjct: 147 NTTFESPIVNGTN--PDAKNNTSSHPLLSDKSSTTGSNNQSRTTADTETVNRNQT 199
>At1g59820.1 68414.m06735 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from Mus
musculus [SP|P70704], {Bos taurus} SP|Q29449; contains
InterPro accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1213
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 17 EISRELQQSTDEGKRETYFVTTPKLAMASNGPNQTHSEDIRNRV 148
E+ REL++S +E + + V PKL++ +G ++ D RV
Sbjct: 760 EVKRELKKSLEEAQHSLHTVAGPKLSLVIDGKCLMYALDPSLRV 803
>At1g02580.1 68414.m00209 maternal embryogenesis control protein /
MEDEA (MEA) nearly identical to MEDEA GB:AAC39446
GI:3089625 from [Arabidopsis thaliana]; contains Pfam
profile PF00856: SET domain
Length = 689
Score = 28.3 bits (60), Expect = 2.6
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +2
Query: 23 SRELQQSTDE--GKRETYFVTTPKLAMASNGPNQTHSEDIRNRVNDKPGFSEENSKHIST 196
S +L +D GKR+ Y++ L ++S + ED +K FSE+ + I T
Sbjct: 144 SSQLMAESDSVIGKRQIYYLNGEALELSSEEDEEDEEEDEEEIKKEKCEFSEDVDRFIWT 203
>At4g08098.1 68417.m01317 hypothetical protein
Length = 176
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = +2
Query: 83 PKLAMASNGPNQTHSEDIRNRVNDKPGFSEENS-KHISTKPDVSKSTNESKVTTEKA 250
P +S+GP E I + D + N+ KH+ TKP + S E A
Sbjct: 105 PPQLKSSSGPASASGEVIPSESEDDDEGEDSNTWKHVKTKPKLDDKNETSTSNAEPA 161
>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 979
Score = 27.1 bits (57), Expect = 5.9
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Frame = +2
Query: 2 EADIREISRELQQSTDEGK-RETYFVTTPKLAMASNGPNQTHSEDIRNRVNDKPG---FS 169
+ D+RE R +S D G+ R+ P+ A++ + H E N V D+ G +
Sbjct: 693 QRDLRE-KRRRSRSRDHGQDRQKRSSPLPRAEKATSRHKRNHEERSENVVKDRSGKHHCN 751
Query: 170 EENSKHISTKPDVSKSTNESK 232
+ K ST + S+ + SK
Sbjct: 752 DNEDKVTSTVSNKSRRYSASK 772
>At1g13170.1 68414.m01527 oxysterol-binding family protein similar
to SP|P16258 Oxysterol-binding protein 1 {Oryctolagus
cuniculus}; contains Pfam profiles PF00169: PH domain,
PF01237: Oxysterol-binding protein
Length = 816
Score = 27.1 bits (57), Expect = 5.9
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -2
Query: 324 PVGHWSPVNDDLSSNVTSV--PLIFTVAFSVVTLLSFVDFDTSGFVDMCFEFSSLKPGLS 151
PVG WS + +++ +++ V P+ F S + F D + S +D E+ K G
Sbjct: 431 PVGLWSIIKENIGKDLSGVCLPVYFNEPLSSLQ-KCFEDLEYSYLIDRALEWG--KQGNE 487
Query: 150 LTRFL 136
L R L
Sbjct: 488 LMRIL 492
>At5g60750.1 68418.m07622 CAAX amino terminal protease family
protein contains Pfam profile PF02517 CAAX amino
terminal protease family protein
Length = 347
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 67 CFAFPFVRRLLQLPTN 20
CF FPFV RL QL N
Sbjct: 210 CFMFPFVNRLSQLNLN 225
>At1g64670.1 68414.m07331 hydrolase, alpha/beta fold family protein
low similarity to
2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase
[Pseudomonas putida] GI:2822275; contains Pfam profile
PF00561: hydrolase, alpha/beta fold family
Length = 469
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 117 KHIPKTSETVLTTNRASVKKIQNT 188
K P T +T+LT N V+K+Q T
Sbjct: 124 KRSPSTKKTLLTVNSTVVEKLQRT 147
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,709,029
Number of Sequences: 28952
Number of extensions: 160211
Number of successful extensions: 569
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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