Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L05
         (366 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    27   0.91 
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    25   3.7  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   4.9  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    25   4.9  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    24   6.4  

>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 27.1 bits (57), Expect = 0.91
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 79  CNGLFWV*TCRSHSVSREHICNLYLV 2
           CN LF+V + ++    R H+ +LYLV
Sbjct: 237 CNDLFYVLSPKNKDALRAHLLSLYLV 262


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 46  FDKSK-PKIGHYTQMAWSESTHVGCAVLQTQDRQWNKFYVVCNYGPA 183
           F  SK P  G++ Q+ ++E +    AVL       + F V C Y PA
Sbjct: 208 FTPSKGPISGNWLQLTYAEPSSAAKAVLSNGMLINDSFMVGCIYSPA 254


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -2

Query: 317 LKRIFLFFIKYQHLSP*GRLQS*LPHTNC 231
           L  I L   KY HLSP  RLQ  L    C
Sbjct: 538 LMEIVLVAFKYLHLSPSNRLQLWLKVAYC 566


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 25  APLKQSDFDKSKPKIGHYTQMAWSES 102
           APL QS +   +P+IG +  +A+  +
Sbjct: 34  APLSQSSWIYRRPRIGRFKSLAYGSA 59


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 7/24 (29%), Positives = 10/24 (41%)
 Frame = -3

Query: 235 IVRWVCLLCRETDRCNYQPARSCI 164
           ++ W CL CR  D         C+
Sbjct: 885 VLSWACLSCRSNDNLGQNNDNHCV 908


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,542,010
Number of Sequences: 5004
Number of extensions: 30179
Number of successful extensions: 65
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)