Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L05
         (366 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   0.85 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   8.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   8.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   8.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   8.0  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 0.85
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 82  QMAWSESTHVGCAVLQ-TQDRQWNKFYVVCNYGPAGNY 192
           Q+ W E+ + G  VL+   D+ W    V+ N    GNY
Sbjct: 87  QLQWDEADYGGIGVLRLPPDKVWKPDIVLFN-NADGNY 123


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 103 WTQTMPSVCNGLF 65
           WT T P++C G+F
Sbjct: 495 WTITTPAICVGVF 507


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 103 WTQTMPSVCNGLF 65
           WT T P++C G+F
Sbjct: 548 WTITTPAICVGVF 560


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 125 CKLKIDSGINSTLYATTGRLVIT 193
           C+ K      + L AT GRLVIT
Sbjct: 181 CRTKHRLTGETRLSATKGRLVIT 203


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -1

Query: 123 NSTSDVSGLRPCHLCVMAYFGFRL 52
           N+   + GL+ CH  V    G+++
Sbjct: 136 NNVQGLRGLKSCHTGVGRNVGYKI 159


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -1

Query: 123 NSTSDVSGLRPCHLCVMAYFGFRL 52
           N+   + GL+ CH  V    G+++
Sbjct: 136 NNVQGLRGLKSCHTGVGRNVGYKI 159


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -1

Query: 123 NSTSDVSGLRPCHLCVMAYFGFRL 52
           N+   + GL+ CH  V    G+++
Sbjct: 136 NNVQGLRGLKSCHTGVGRNVGYKI 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,917
Number of Sequences: 438
Number of extensions: 2292
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)