Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L05
(366 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g19990.1 68415.m02337 pathogenesis-related protein 1 (PR-1) i... 56 7e-09
At5g02730.1 68418.m00214 allergen V5/Tpx-1-related family protei... 53 5e-08
At4g33730.1 68417.m04789 pathogenesis-related protein, putative ... 52 2e-07
At3g09590.1 68416.m01139 pathogenesis-related protein, putative ... 52 2e-07
At5g57625.1 68418.m07199 allergen V5/Tpx-1-related family protei... 51 2e-07
At4g25780.1 68417.m03710 pathogenesis-related protein, putative ... 51 2e-07
At4g25790.1 68417.m03711 allergen V5/Tpx-1-related family protei... 51 3e-07
At2g14610.1 68415.m01643 pathogenesis-related protein 1 (PR-1) i... 50 5e-07
At4g33720.1 68417.m04788 pathogenesis-related protein, putative ... 50 6e-07
At1g50060.1 68414.m05617 pathogenesis-related protein, putative ... 50 6e-07
At1g01310.1 68414.m00047 allergen V5/Tpx-1-related family protei... 50 6e-07
At2g14580.1 68415.m01633 pathogenesis-related protein, putative ... 49 8e-07
At5g26130.1 68418.m03108 pathogenesis-related protein, putative ... 48 3e-06
At4g31470.1 68417.m04471 pathogenesis-related protein, putative ... 48 3e-06
At3g19690.1 68416.m02494 pathogenesis-related protein, putative ... 45 1e-05
At4g30320.1 68417.m04310 allergen V5/Tpx-1-related family protei... 45 2e-05
At4g33710.1 68417.m04787 pathogenesis-related protein, putative ... 43 7e-05
At2g19980.1 68415.m02336 allergen V5/Tpx-1-related family protei... 42 2e-04
At5g66590.1 68418.m08394 allergen V5/Tpx-1-related family protei... 40 7e-04
At2g19970.1 68415.m02335 pathogenesis-related protein, putative ... 39 9e-04
At1g50050.1 68414.m05616 pathogenesis-related protein, putative ... 34 0.033
At4g39390.2 68417.m05576 transporter-related low similarity to g... 32 0.10
At4g39390.1 68417.m05575 transporter-related low similarity to g... 32 0.10
At1g72120.1 68414.m08336 proton-dependent oligopeptide transport... 27 3.8
At5g49660.1 68418.m06147 leucine-rich repeat transmembrane prote... 27 5.0
At5g11610.2 68418.m01356 exostosin family protein contains Pfam ... 27 5.0
At5g11610.1 68418.m01355 exostosin family protein contains Pfam ... 27 5.0
At2g37460.1 68415.m04595 nodulin MtN21 family protein similar to... 27 5.0
At3g59290.1 68416.m06609 epsin N-terminal homology (ENTH) domain... 26 8.8
>At2g19990.1 68415.m02337 pathogenesis-related protein 1 (PR-1)
identical to pathogenesis-related protein 1 {Arabidopsis
thaliana} GI:166805; contains an extracellular proteins
SCP/Tpx-1/Ag5/PR-1/Sc7 signature (PDOC00772)
Length = 176
Score = 56.0 bits (129), Expect = 7e-09
Identities = 21/47 (44%), Positives = 33/47 (70%)
Frame = +1
Query: 70 GHYTQMAWSESTHVGCAVLQTQDRQWNKFYVVCNYGPAGNYIDQSPY 210
GHYTQ+ W +S +GCA ++ ++ ++ +V+C+Y P GNYI Q PY
Sbjct: 132 GHYTQIVWRDSVRLGCASVRCKNDEY--IWVICSYDPPGNYIGQRPY 176
>At5g02730.1 68418.m00214 allergen V5/Tpx-1-related family protein
low similarity to SP|Q05968 Pathogenesis-related protein
1 precursor {Hordeum vulgare}; contains Pfam profile
PF00188: SCP-like extracellular protein
Length = 205
Score = 53.2 bits (122), Expect = 5e-08
Identities = 24/57 (42%), Positives = 33/57 (57%)
Frame = +1
Query: 52 KSKPKIGHYTQMAWSESTHVGCAVLQTQDRQWNKFYVVCNYGPAGNYIDQSPYKAGK 222
KS GHYTQ+ W +T VGCA + + + F V+C Y P+GNY +SP+ K
Sbjct: 143 KSGAMCGHYTQIVWRTTTAVGCARSKCDNNR--GFLVICEYSPSGNYEGESPFDIPK 197
>At4g33730.1 68417.m04789 pathogenesis-related protein, putative
similar to SP|P33154 Pathogenesis-related protein 1
precursor (PR-1) {Arabidopsis thaliana}; contains Pfam
profile PF00188: SCP-like extracellular protein
Length = 172
Score = 51.6 bits (118), Expect = 2e-07
Identities = 23/50 (46%), Positives = 27/50 (54%)
Frame = +1
Query: 61 PKIGHYTQMAWSESTHVGCAVLQTQDRQWNKFYVVCNYGPAGNYIDQSPY 210
P GHYTQ+ W S +GC + + VVCNY PAGNYI PY
Sbjct: 126 PACGHYTQVVWRGSARLGCGKAKCNN---GASIVVCNYDPAGNYIGARPY 172
>At3g09590.1 68416.m01139 pathogenesis-related protein, putative
similar to SP|Q05968 Pathogenesis-related protein 1
precursor {Hordeum vulgare}; contains Pfam profile
PF00188: SCP-like extracellular protein
Length = 186
Score = 51.6 bits (118), Expect = 2e-07
Identities = 22/47 (46%), Positives = 30/47 (63%)
Frame = +1
Query: 70 GHYTQMAWSESTHVGCAVLQTQDRQWNKFYVVCNYGPAGNYIDQSPY 210
GHYTQM W E+T VGCA ++ + + + VVC Y P GNY + P+
Sbjct: 142 GHYTQMVWRETTAVGCARVKCHNGR--GYLVVCEYDPRGNYEGERPF 186
>At5g57625.1 68418.m07199 allergen V5/Tpx-1-related family protein
low similarity to SP|Q40374 Pathogenesis-related protein
PR-1 precursor {Medicago truncatula}; contains Pfam
profile PF00188: SCP-like extracellular protein
Length = 207
Score = 51.2 bits (117), Expect = 2e-07
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +1
Query: 70 GHYTQMAWSESTHVGCAVLQTQDRQWNKFYVVCNYGPAGNYIDQSPY 210
GHYTQM W ++ +GCA + ++ ++ CNY P GNY+ + PY
Sbjct: 163 GHYTQMVWRDTKRLGCARVVCENGAG--VFITCNYDPPGNYVGEKPY 207
>At4g25780.1 68417.m03710 pathogenesis-related protein, putative
similar to gene PR-1 protein - Medicago truncatula,
SP|Q40374; contains Pfam profile PF00188: SCP-like
extracellular protein
Length = 190
Score = 51.2 bits (117), Expect = 2e-07
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = +1
Query: 70 GHYTQMAWSESTHVGCAVLQTQDRQWNKFYVVCNYGPAGNYIDQSPY 210
GHYTQ+ W + VGCA + + ++ CNY P GNYI Q PY
Sbjct: 147 GHYTQIVWKSTRRVGCARVVCDN---GGIFMTCNYDPPGNYIGQKPY 190
>At4g25790.1 68417.m03711 allergen V5/Tpx-1-related family protein
similar to SP|Q40374 Pathogenesis-related protein PR-1
precursor {Medicago truncatula}; contains Pfam profile
PF00188: SCP-like extracellular protein
Length = 210
Score = 50.8 bits (116), Expect = 3e-07
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +1
Query: 70 GHYTQMAWSESTHVGCAVLQTQDRQWNKFYVVCNYGPAGNYIDQSPY 210
GHYTQ+ W E+ +GCA + ++ ++ CNY P GNY+ + PY
Sbjct: 166 GHYTQIVWRETRRLGCARVVCENGAG--VFITCNYDPPGNYVGEKPY 210
>At2g14610.1 68415.m01643 pathogenesis-related protein 1 (PR-1)
identical to GB:M90508 SP|P33154
Length = 161
Score = 50.0 bits (114), Expect = 5e-07
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +1
Query: 70 GHYTQMAWSESTHVGCAVLQTQDRQWNKFYVVCNYGPAGNYIDQSPY 210
GHYTQ+ W +S +GCA ++ + + CNY P GNY+++ PY
Sbjct: 118 GHYTQVVWRKSVRLGCAKVRCNN---GGTIISCNYDPRGNYVNEKPY 161
>At4g33720.1 68417.m04788 pathogenesis-related protein, putative
similar to SP|P33154 Pathogenesis-related protein 1
precursor (PR-1) {Arabidopsis thaliana}; contains Pfam
profile PF00188: SCP-like extracellular protein
Length = 163
Score = 49.6 bits (113), Expect = 6e-07
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +1
Query: 70 GHYTQMAWSESTHVGCAVLQTQDRQWNKFYVVCNYGPAGNYIDQSPY 210
GHYTQ+ W S +GCA ++ + Q ++ CNY P GN++ + PY
Sbjct: 120 GHYTQVVWRNSERLGCAKVRCNNGQ---TFITCNYDPPGNWVGEWPY 163
>At1g50060.1 68414.m05617 pathogenesis-related protein, putative
similar to prb-1b [Nicotiana tabacum] GI:19970; contains
Pfam profile PF00188: SCP-like extracellular protein
Length = 161
Score = 49.6 bits (113), Expect = 6e-07
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1
Query: 73 HYTQMAWSESTHVGCAVLQTQDRQWNKFYVVCNYGPAGNYIDQSPY 210
HYTQ+ W +S +GCA +Q + W +V CNY GN++ + PY
Sbjct: 119 HYTQVVWRDSVKIGCARVQCTNTWW---FVSCNYNSPGNWVGEYPY 161
>At1g01310.1 68414.m00047 allergen V5/Tpx-1-related family protein
similar to pathogenesis related protein-1 GB:AAC25629
GI:3290004 from [Zea mays]; contains Pfam profile
PF00188: SCP-like extracellular protein
Length = 241
Score = 49.6 bits (113), Expect = 6e-07
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +1
Query: 70 GHYTQMAWSESTHVGCAVLQTQDRQWNKFYVVCNYGPAGNYIDQSPY 210
GHYTQ+ W +ST VGCA + + Y +C Y P GNY ++P+
Sbjct: 176 GHYTQIVWRDSTKVGCASVDCSN---GGVYAICVYNPPGNYEGENPF 219
>At2g14580.1 68415.m01633 pathogenesis-related protein, putative
similar to SP|P33154 Pathogenesis-related protein 1
precursor (PR-1) {Arabidopsis thaliana}; contains Pfam
profile PF00188: SCP-like extracellular protein
Length = 161
Score = 49.2 bits (112), Expect = 8e-07
Identities = 20/47 (42%), Positives = 27/47 (57%)
Frame = +1
Query: 70 GHYTQMAWSESTHVGCAVLQTQDRQWNKFYVVCNYGPAGNYIDQSPY 210
GHYTQ+ W S +GCA ++ + + CNY P GNY +Q PY
Sbjct: 118 GHYTQVVWRNSVRLGCAKVRCNN---GGTIISCNYDPPGNYANQKPY 161
>At5g26130.1 68418.m03108 pathogenesis-related protein, putative
similar to PR-1a protein [Nicotiana tabacum] GI:19944;
contains Pfam profile PF00188: SCP-like extracellular
protein
Length = 164
Score = 47.6 bits (108), Expect = 3e-06
Identities = 27/66 (40%), Positives = 34/66 (51%)
Frame = +1
Query: 13 DYKYAPLKQSDFDKSKPKIGHYTQMAWSESTHVGCAVLQTQDRQWNKFYVVCNYGPAGNY 192
DY YA SD + GHYTQ+ W S VGCA ++ + +V CNY P GNY
Sbjct: 106 DYIYASNTCSD----GKQCGHYTQVVWRTSEWVGCAKVKCDN---GGTFVTCNYYPPGNY 158
Query: 193 IDQSPY 210
+ PY
Sbjct: 159 RGRWPY 164
>At4g31470.1 68417.m04471 pathogenesis-related protein, putative
similar to pathogenesis related protein-1 from Zea mays
GI:3290004; contains Pfam profile PF00188: SCP-like
extracellular protein
Length = 185
Score = 47.6 bits (108), Expect = 3e-06
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +1
Query: 73 HYTQMAWSESTHVGCAVLQTQDRQWNKFYVVCNYGPAGNYIDQSPY 210
HYTQ+ W +S+ +GCA+ + +++CNY P GN + Q P+
Sbjct: 143 HYTQLVWKKSSRIGCAISFCKT---GDTFIICNYDPPGNIVGQPPF 185
>At3g19690.1 68416.m02494 pathogenesis-related protein, putative
similar to PR-1a protein GI:19944 GB:X06930 from
[Nicotiana tabacum]; contains Pfam profile PF00188:
SCP-like extracellular protein
Length = 161
Score = 45.2 bits (102), Expect = 1e-05
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +1
Query: 73 HYTQMAWSESTHVGCAVLQTQDRQWNKFYVVCNYGPAGNYIDQSPY 210
HYTQ+ W + +GCA + ++ CNY P GNYI + P+
Sbjct: 119 HYTQVVWKNTVRLGCAKVVCNS---GGTFITCNYDPPGNYIGEKPF 161
>At4g30320.1 68417.m04310 allergen V5/Tpx-1-related family protein
similar to SP|Q40374 Pathogenesis-related protein PR-1
precursor {Medicago truncatula}; contains Pfam profile
PF00188: SCP-like extracellular protein
Length = 161
Score = 44.8 bits (101), Expect = 2e-05
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 70 GHYTQMAWSESTHVGCAVLQTQDRQWNKFYVVCNYGPAGNYIDQSPY 210
GHYTQ+ W + +GCA + ++ CNY P GN++ + PY
Sbjct: 117 GHYTQIVWKNTQKIGCAHVICNG--GGGVFLTCNYDPPGNFLGRKPY 161
>At4g33710.1 68417.m04787 pathogenesis-related protein, putative
similar to PR-1a protein [Nicotiana tabacum] GI:19944;
contains Pfam profile PF00188: SCP-like extracellular
protein
Length = 166
Score = 42.7 bits (96), Expect = 7e-05
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +1
Query: 37 QSDFDKSKPKIGHYTQMAWSESTHVGCAVLQTQDRQWNKFYVVCNYGPAGNYIDQSPY 210
+S+ ++ + GHYTQ+ W S VGCA ++ + +V CNY GN + PY
Sbjct: 112 KSNTCRAGKQCGHYTQVVWKNSEWVGCAKVKCDN---GGTFVTCNYSHPGNVRGRRPY 166
>At2g19980.1 68415.m02336 allergen V5/Tpx-1-related family protein
low similarity to SP|P33154 Pathogenesis-related protein
1 precursor (PR-1) {Arabidopsis thaliana}; contains Pfam
profile PF00188: SCP-like extracellular protein
Length = 165
Score = 41.5 bits (93), Expect = 2e-04
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +1
Query: 49 DKSKPKIGHYTQMAWSESTHVGCAVLQTQDRQWNKFYVVCNYGP 180
+K GHYTQ+ ++STH+GC ++ ++ +VVCNY P
Sbjct: 113 NKCSEPCGHYTQIVANQSTHLGCGTVRCFKNEY--VWVVCNYAP 154
>At5g66590.1 68418.m08394 allergen V5/Tpx-1-related family protein
contains similarity to SP|Q41495 STS14 protein precursor
{Solanum tuberosum}; contains Pfam profile PF00188:
SCP-like extracellular protein
Length = 185
Score = 39.5 bits (88), Expect = 7e-04
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +1
Query: 37 QSDFDKSKPKIGHYTQMAWSESTHVGCAVLQTQDRQWNKFYVVCNYGPAGNYIDQSPY 210
+SD + G Y Q+ W S +GCA Q + + +C Y P GN I Q PY
Sbjct: 130 KSDTCAANHTCGVYKQVVWRNSKELGCA--QATCTKESTVLTICFYNPPGNVIGQKPY 185
>At2g19970.1 68415.m02335 pathogenesis-related protein, putative
similar to pathogenesis-related protein 1 {Arabidopsis
thaliana} GI:166805; contains Pfam profile PF00188:
SCP-like extracellular protein
Length = 177
Score = 39.1 bits (87), Expect = 9e-04
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 49 DKSKPKIGHYTQMAWSESTHVGCAVLQTQDRQWNKFYVVCNYGP 180
+K K GHYTQM ++S +GC + + + Y+VCNY P
Sbjct: 125 NKCKDVCGHYTQMVANQSLSLGCGSFRCHENE--LIYIVCNYYP 166
>At1g50050.1 68414.m05616 pathogenesis-related protein, putative
similar to pathogenesis-related protein 1b precursor
(pr-1b) GB:X03465 GI:19977 from [Nicotiana tabacum];
contains Pfam profile PF00188: SCP-like extracellular
protein
Length = 226
Score = 33.9 bits (74), Expect = 0.033
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 73 HYTQMAWSESTHVGCAVLQTQDRQWNKFYVVCNY 174
HYTQ+ WS S +GCA + + ++V CNY
Sbjct: 120 HYTQVVWSNSVKIGCARVLCNN---GGYFVGCNY 150
>At4g39390.2 68417.m05576 transporter-related low similarity to
glucose-6-phosphate/phosphate-translocator precursor
[Solanum tuberosum] GI:2997593
Length = 337
Score = 32.3 bits (70), Expect = 0.10
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = -1
Query: 333 ISSWSFEKNFFIFHQISTPLAVGTFAVVVAAY*LSAGFACFVGRLIDV-ITSRPVVAYNV 157
I+ WS + H + ++G+F ++ + A VG +D +T++ V AYN
Sbjct: 167 IAVWSTALQQYYVHYLQRKYSLGSFNLLAHTAPVQAASLLLVGPFLDYWLTNQRVDAYNF 226
Query: 156 EFIPLSILSLQNS 118
F+ L L L S
Sbjct: 227 SFVSLFFLILSCS 239
>At4g39390.1 68417.m05575 transporter-related low similarity to
glucose-6-phosphate/phosphate-translocator precursor
[Solanum tuberosum] GI:2997593
Length = 337
Score = 32.3 bits (70), Expect = 0.10
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = -1
Query: 333 ISSWSFEKNFFIFHQISTPLAVGTFAVVVAAY*LSAGFACFVGRLIDV-ITSRPVVAYNV 157
I+ WS + H + ++G+F ++ + A VG +D +T++ V AYN
Sbjct: 167 IAVWSTALQQYYVHYLQRKYSLGSFNLLAHTAPVQAASLLLVGPFLDYWLTNQRVDAYNF 226
Query: 156 EFIPLSILSLQNS 118
F+ L L L S
Sbjct: 227 SFVSLFFLILSCS 239
>At1g72120.1 68414.m08336 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 1095
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = -1
Query: 213 FVGRLIDVITSRPVVAYNVEFIPLSILSLQNSTSDVSGLRPCHLCVMAYFGFRLVEV 43
F+GR +I S + + F+ LS + N T++V+ L V+ +F LV +
Sbjct: 97 FLGRYRTIIISSLIYVLGLAFLTLSAFLIPN-TTEVTSSTSSFLNVLFFFSLYLVAI 152
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = -1
Query: 213 FVGRLIDVITSRPVVAYNVEFIPLSILSLQNSTSDVSGLRPCHLCVMAYFGFRLVEV 43
F+GR I +I + + + F+ LS + N+T +V+ L + +F LV +
Sbjct: 631 FLGRYITIIIASFIYVLGLAFLTLSAFLIPNNT-EVTSSPSSFLNALFFFSLYLVAI 686
>At5g49660.1 68418.m06147 leucine-rich repeat transmembrane protein
kinase, putative contains leucine rich repeat (LRR)
domains, Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 966
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 138 ILSLQNSTSDVSGLRPCHLCVMAYFGFRLVEVTLFQGSIFVIFTSC 1
+++L S + +SG P H+C + LV F GSI + SC
Sbjct: 342 MIALDVSENRLSGPLPAHVCKSGKLLYFLVLQNRFTGSIPETYGSC 387
>At5g11610.2 68418.m01356 exostosin family protein contains Pfam
domain, PF03016: Exostosin family
Length = 453
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 174 VVAYNVEFIPLSILSLQNSTSDVSGLRPCHLCVMAYF 64
VV +V + SLQN + G RP ++A+F
Sbjct: 355 VVGKDVSLPETKVSSLQNPNGKIGGSRPSKRTILAFF 391
>At5g11610.1 68418.m01355 exostosin family protein contains Pfam
domain, PF03016: Exostosin family
Length = 546
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 174 VVAYNVEFIPLSILSLQNSTSDVSGLRPCHLCVMAYF 64
VV +V + SLQN + G RP ++A+F
Sbjct: 355 VVGKDVSLPETKVSSLQNPNGKIGGSRPSKRTILAFF 391
>At2g37460.1 68415.m04595 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 380
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 4 RGKDYKYAPLKQSDFDKSKPKI 69
+GKDYKY Q D + ++PK+
Sbjct: 328 KGKDYKYNSTLQLDDESAQPKL 349
>At3g59290.1 68416.m06609 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain;
similar to Af10-protein - Avena fatua, EMBL:U80041
Length = 1024
Score = 25.8 bits (54), Expect = 8.8
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +1
Query: 199 QSPYKA--GKPSGQLVCGNYDCKRPYG 273
Q+PY PSGQ GN+ ++PYG
Sbjct: 728 QTPYPTTPNAPSGQFDGGNFMTQQPYG 754
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,902,853
Number of Sequences: 28952
Number of extensions: 155946
Number of successful extensions: 405
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 477939072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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