Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L04
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch...    27   1.4  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    27   2.5  
SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch...    25   7.6  

>SPAC1952.15c |rec24|mug6|meiotic recombination protein
           Rec24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 350

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 109 FVLKNAIVTKILTENNTVLGVKVIKQGKELKFFTNKEVVI 228
           +VL   I+T+ + +NN   G  VI + K L+F+   E +I
Sbjct: 196 YVLDLIIITQSIMQNNANNGTGVISRAKFLEFYVFLEQLI 235


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 463 SRHESMAAYLPLNKDVPNLPEYGFYPVCIPQ 555
           SR++S+  Y+  + D  NLPEY   PV I Q
Sbjct: 381 SRYDSVDLYI--SNDKRNLPEYNDVPVVINQ 409


>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 442

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 287 SLGPIPDKYNNFAVLKVPADITTSL 213
           +LGPI  K+N  A+  + AD+   L
Sbjct: 388 ALGPIAGKFNILALRTIKADVVVGL 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.137    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,236,828
Number of Sequences: 5004
Number of extensions: 44395
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)