Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L04
(561 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 59 2e-09
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 55 3e-08
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 54 1e-07
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 50 2e-06
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 49 2e-06
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 46 2e-05
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 45 4e-05
03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112 33 0.21
01_07_0126 - 41222916-41222942,41223120-41223190,41223478-412235... 30 1.1
10_08_0586 + 19005991-19006273,19006481-19006642,19006741-190067... 30 1.5
10_08_0110 + 14877874-14878635 30 1.5
01_01_0521 - 3826257-3826616,3826758-3826918,3826992-3827049,382... 29 3.4
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 28 5.9
03_02_0913 + 12344096-12344125,12344284-12345970,12346243-123465... 27 7.7
02_04_0555 - 23840634-23841035,23841388-23841501,23841742-238418... 27 7.7
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 59.3 bits (137), Expect = 2e-09
Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Frame = +1
Query: 7 GEKIGVGRFSHTINNGQRHSTLTALLNKSKKPNLFVLKNAIVTKILTENNTVLGVKV--- 177
G KIG F N+GQRH T L ++ L VL A V++IL ++ + V
Sbjct: 202 GTKIGGTIFD---NSGQRH-TAADFLRHARPRGLTVLLYATVSRILFKSQDGVPYPVAYG 257
Query: 178 --------IKQGKELKFFTNKEVVISAGTFNTAKLLYLSGIGPKDHLDSLGIDVVQDLP- 330
++ L+ EV++SAGT + +LL LSG+GP+ HL++ GI+V+ D P
Sbjct: 258 VVFSDPLGVQHRVYLRDGDKNEVIVSAGTLGSPQLLMLSGVGPQAHLEAHGIEVIVDQPM 317
Query: 331 VGDNLQDHVMILTYI 375
VG + D+ M +I
Sbjct: 318 VGQGVADNPMNSVFI 332
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 55.2 bits (127), Expect = 3e-08
Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Frame = +1
Query: 7 GEKIGVGRFSHTINNGQRHSTLTALLNKSKKPNLFVLKNAIVTKILTENN----TVLGVK 174
G K+G F G+RH T LL S+ + V A V +I+ GV
Sbjct: 193 GTKVGGSIFDA---QGRRH-TAADLLRYSRPDGIDVFLRARVARIVFSRKGTKPVARGVL 248
Query: 175 V--IKQGKELKFFTN---KEVVISAGTFNTAKLLYLSGIGPKDHLDSLGIDVVQDLP-VG 336
+ G + + + E+++SAG + +LL LSG+GP DHL+ GI +V D P VG
Sbjct: 249 YHDARGGSHMAYLNHGARNEIILSAGALGSPQLLMLSGVGPADHLEEFGISLVLDHPGVG 308
Query: 337 DNLQDHVMILTYI 375
+ D+ M Y+
Sbjct: 309 QGMSDNPMNAIYV 321
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 53.6 bits (123), Expect = 1e-07
Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 13/136 (9%)
Frame = +1
Query: 7 GEKIGVGRFSHTINNGQRHSTLTALLNKSKKPNLFVLKNAIVTKILTENNTVLGVKVIKQ 186
G K+G F G+RH T LL ++ + VL A V KIL N G + +
Sbjct: 199 GTKVGGSIFDA---EGRRH-TAADLLRYARTDGIDVLLRARVAKILF--NVRAGRRPVAH 252
Query: 187 G---------KELKFFTN---KEVVISAGTFNTAKLLYLSGIGPKDHLDSLGIDVVQDLP 330
G + +N E+++SAG + +LL LSG+GP DHL S GI +V + P
Sbjct: 253 GVVFHDSEGQMHRAYLSNGRGNEIILSAGAMGSPQLLMLSGVGPADHLRSFGITLVLNQP 312
Query: 331 -VGDNLQDHVMILTYI 375
VG + D+ M Y+
Sbjct: 313 AVGQGMSDNPMNAIYV 328
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 49.6 bits (113), Expect = 2e-06
Identities = 47/135 (34%), Positives = 67/135 (49%), Gaps = 12/135 (8%)
Frame = +1
Query: 7 GEKIGVGRFSHTINNGQRHSTLTALLNKSKKPNLFVLKNAIVTKIL--TENN----TVLG 168
G K+G F G RH T LL NL VL +A VT+I+ TE +G
Sbjct: 215 GTKVGGTIFDEA---GYRH-TAADLLAAGNHNNLRVLLHASVTRIIFNTEQEHRKPRTIG 270
Query: 169 VKVIKQ--GKELKFFT---NKEVVISAGTFNTAKLLYLSGIGPKDHLDSLGIDVV-QDLP 330
V+ + G++ F T + E++ISAG + +LL LSGIGP+ L I VV ++
Sbjct: 271 VEFKDENGGQQHAFLTRNRDSEIIISAGAIGSPQLLLLSGIGPRKELKKHNISVVLRNEH 330
Query: 331 VGDNLQDHVMILTYI 375
VG + D+ M +I
Sbjct: 331 VGKGMSDNPMNSIFI 345
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 49.2 bits (112), Expect = 2e-06
Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 5/62 (8%)
Frame = +1
Query: 217 EVVISAGTFNTAKLLYLSGIGPKDHLDSLGIDVVQDLP-VG----DNLQDHVMILTYIAV 381
EV++SAG+ + +LL LSGIGP + L SLGI V D+P VG DN ++ + I+ I +
Sbjct: 301 EVILSAGSLGSPQLLLLSGIGPANDLTSLGIPVFADVPDVGKHMFDNPRNGISIIPSIPI 360
Query: 382 DN 387
D+
Sbjct: 361 DH 362
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 46.4 bits (105), Expect = 2e-05
Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
Frame = +1
Query: 4 RGEKIGVGRFSHTINNGQRHSTLTALLNKSKKPNLFVLKNAIVTKILTENNTVLGVKV-I 180
+G KIG F G+RH T L ++ L V A T V +
Sbjct: 206 QGTKIGGTIFDRA---GRRH-TAADFLRRAHPRRLTVFLRATGTATPVAYGVVFTDPAGV 261
Query: 181 KQGKELKFFTNKEVVISAGTFNTAKLLYLSGIGPKDHLDSLGIDVVQDLP-VGDNLQDHV 357
+ L+ EV+++AGT + +LL LSG+GP+ L+ GI V D P VG + D+
Sbjct: 262 RHHVYLRGGAKSEVIVTAGTLGSPQLLMLSGVGPRGELEKHGILPVLDQPRVGQGVADNP 321
Query: 358 MILTYI 375
M ++
Sbjct: 322 MNSVFV 327
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 45.2 bits (102), Expect = 4e-05
Identities = 46/135 (34%), Positives = 64/135 (47%), Gaps = 12/135 (8%)
Frame = +1
Query: 7 GEKIGVGRFSHTINNGQRHSTLTALLNKSKKPNLFVLKNAIVTKILTENNT------VLG 168
G K+G F T G RH T LL NL VL +A V +I+ + G
Sbjct: 201 GTKVGGTIFDET---GYRH-TAADLLAAGDPNNLRVLLHASVNRIVFNSQRGQLKPRATG 256
Query: 169 VKVIKQGKEL-KFFTNK----EVVISAGTFNTAKLLYLSGIGPKDHLDSLGIDVV-QDLP 330
V+ + L + F N E+++SAG + +LL LSGIGPK+ L S I VV +
Sbjct: 257 VQFTDENGGLHQAFLNSNCDSEIIVSAGAIGSPQLLLLSGIGPKNDLRSHKIPVVLHNKY 316
Query: 331 VGDNLQDHVMILTYI 375
VG + D+ M +I
Sbjct: 317 VGKGMADNPMNSIFI 331
>03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112
Length = 1372
Score = 32.7 bits (71), Expect = 0.21
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +1
Query: 364 LTYIAVDNGTCIPDESTEAMDVIRYLYNRSGSLSR 468
LTY A+ NG C + A+D+I+YL +RS S++R
Sbjct: 405 LTYSALLNGYCKHSKLGPALDLIKYLRSRSISINR 439
>01_07_0126 -
41222916-41222942,41223120-41223190,41223478-41223560,
41223587-41223653,41223740-41223848,41224431-41224511,
41224671-41224940,41225035-41226510,41226832-41226908,
41227812-41227912,41229397-41229660,41230964-41231136
Length = 932
Score = 30.3 bits (65), Expect = 1.1
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +1
Query: 250 AKLLYLSGIGPKDHLDSLGIDVVQDLPVGDNLQDHVMILTYIAVDNGTCIPDESTEAMDV 429
AKL YLS P D ID+V L V D+++ + I++D T ST D+
Sbjct: 219 AKLDYLSSQEPGDESQINAIDIVDRLLVEDDIETY----QQISIDQTTRAKSASTLGSDI 274
Query: 430 IRYLYNRS 453
+ L R+
Sbjct: 275 AQCLAKRA 282
>10_08_0586 +
19005991-19006273,19006481-19006642,19006741-19006796,
19006899-19007061,19007753-19007859,19008879-19008945,
19009176-19009375
Length = 345
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 226 ISAGTFNTAKLLYLSGIGPKDHLDSLGIDVVQDLPVGDNL--QDHVMILTYIAVDNG 390
++ G ++ A L + G G +D DV DLP+ D + QD ++ + I D G
Sbjct: 9 LAQGAYDGADPLDIGGFGDATGVDDAAEDVGDDLPLLDEVPAQDDLLRVVLIVADRG 65
>10_08_0110 + 14877874-14878635
Length = 253
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/38 (34%), Positives = 26/38 (68%)
Frame = +1
Query: 292 LDSLGIDVVQDLPVGDNLQDHVMILTYIAVDNGTCIPD 405
+D++G+DV + GD + H ++L+YIA+++ +PD
Sbjct: 179 VDAMGLDVARR--GGDRARLHELLLSYIALNDRDALPD 214
>01_01_0521 -
3826257-3826616,3826758-3826918,3826992-3827049,
3827426-3827497,3827582-3827639,3828231-3828347,
3828630-3828782,3829182-3829346,3829814-3830132,
3830276-3830780
Length = 655
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +1
Query: 337 DNLQDHVMILTYIAVDNGTCIPDESTEAMDVIRYLYNRSGSL 462
+N++D V+ + + +P E+ E++ V++Y NRSGS+
Sbjct: 460 NNIEDIVVSKIEDRISLWSFLPKENGESIQVLKYGVNRSGSI 501
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 27.9 bits (59), Expect = 5.9
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Frame = +1
Query: 274 IGPKDHLDSLGIDVVQDLPVGDNLQDHVMILTYI--AVDNGTCIPDESTEAMDVIRYLYN 447
IG KD ++ G D DLP + +D TY+ A D G + + R
Sbjct: 824 IGLKDDYEASGCDFAADLPQENAYEDEGETCTYLPEAYDGGLLSQMGHRKQLGQQRINGA 883
Query: 448 RSGSLSRHESMAAYL 492
RS +S H YL
Sbjct: 884 RSYGISTHVPFEPYL 898
>03_02_0913 + 12344096-12344125,12344284-12345970,12346243-12346573,
12346712-12347567,12347760-12347883,12348469-12348688,
12348771-12349229,12349318-12349519
Length = 1302
Score = 27.5 bits (58), Expect = 7.7
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = +2
Query: 401 LMSLQKLWMLSDIFTIGLDLCLDMKAWLLI 490
+ S+ LW ++ + + + L +D++ W+LI
Sbjct: 1178 IWSMGSLWTIAVVILVNIHLAMDIQRWVLI 1207
>02_04_0555 -
23840634-23841035,23841388-23841501,23841742-23841844,
23842415-23842467,23842544-23842644,23842702-23842879,
23842998-23843120,23843515-23843656,23843854-23843959,
23844236-23844305,23844430-23844588,23845229-23845329,
23845410-23845503
Length = 581
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 31 FSHTINNGQRHSTLTALLNKSKKPNLFVLKNAIVT-KILTENNTVLGVKVI 180
F H N +R +L+N+ KK F + + T K + N T LG + +
Sbjct: 403 FVHEKLNSRRQELCQSLINQGKKRECFTEDSQLATNKNIAPNTTTLGEETL 453
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.137 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,398,109
Number of Sequences: 37544
Number of extensions: 246840
Number of successful extensions: 651
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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