Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L04
         (561 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5369| Best HMM Match : wnt (HMM E-Value=2.9e-18)                    30   1.1  
SB_24353| Best HMM Match : CUB (HMM E-Value=0.18)                      29   2.6  
SB_24478| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_5369| Best HMM Match : wnt (HMM E-Value=2.9e-18)
          Length = 354

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 307 IDVVQDLPVGDNLQDHVMILTYIAVDNGTCIPDESTEAMDVIRYLYNRSGS 459
           +DVV D+P  D L+ H   L Y+      C PD S      +  L NR+ +
Sbjct: 192 VDVVLDVPGSDILKPHRKSLVYMVHSPTYCDPDLSRGIAGTMSRLCNRTAT 242


>SB_24353| Best HMM Match : CUB (HMM E-Value=0.18)
          Length = 564

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -2

Query: 281 GPIPDKYNNFAVLKVPADITTSLFVKNFSSFPCLITLT---PRTVLFSVRILVTIAFLRT 111
           GP  DKY++  V     D+T   F       P  +T+T    +T+   V I +TI  ++T
Sbjct: 60  GPDCDKYDSVRVYIFETDLTLGHFCNGHYPDPTHLTITITIIKTINIPVAIAITITIIKT 119


>SB_24478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 747

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = -2

Query: 317 TTSIPKESKWSLGPIPDKYNNFAVLKVPADITTSLFVKNFSSFPCLITLTPRTVLFSVRI 138
           T   P++ K     + D  N  A+L   + I  S+ ++NFS FPC +    + + F +  
Sbjct: 243 TQESPEQKKALQHEVLDIRNAKAILD--SVIPKSMLIENFSLFPCFLLFVRQVLQFHLVE 300

Query: 137 LVTI 126
             T+
Sbjct: 301 AATV 304


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.137    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,202,046
Number of Sequences: 59808
Number of extensions: 311405
Number of successful extensions: 743
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)