Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L04
(561 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC034502-1|AAH34502.1| 594|Homo sapiens choline dehydrogenase p... 87 5e-17
AJ272267-1|CAB75961.1| 482|Homo sapiens choline dehydrogenase p... 87 5e-17
EF488684-1|ABO43042.1| 1424|Homo sapiens nuclear receptor coacti... 30 6.4
BC122547-1|AAI22548.1| 1419|Homo sapiens nuclear receptor coacti... 30 6.4
BC119001-1|AAI19002.1| 1420|Homo sapiens nuclear receptor coacti... 30 6.4
BC092516-1|AAH92516.1| 1422|Homo sapiens nuclear receptor coacti... 30 6.4
AL034418-3|CAI42141.1| 1420|Homo sapiens nuclear receptor coacti... 30 6.4
AL034418-2|CAC17693.1| 1424|Homo sapiens nuclear receptor coacti... 30 6.4
AL034418-1|CAB40662.1| 1415|Homo sapiens nuclear receptor coacti... 30 6.4
AF036892-1|AAB92368.1| 1412|Homo sapiens nuclear receptor coacti... 30 6.4
AF016031-1|AAC51849.1| 1424|Homo sapiens thyroid hormone recepto... 30 6.4
AF012108-1|AAC51677.1| 1420|Homo sapiens Amplified in Breast Can... 30 6.4
AF010227-1|AAC51663.1| 1417|Homo sapiens receptor-associated coa... 30 6.4
AB209863-1|BAD93100.1| 1427|Homo sapiens nuclear receptor coacti... 30 6.4
>BC034502-1|AAH34502.1| 594|Homo sapiens choline dehydrogenase
protein.
Length = 594
Score = 86.6 bits (205), Expect = 5e-17
Identities = 48/117 (41%), Positives = 69/117 (58%), Gaps = 2/117 (1%)
Frame = +1
Query: 19 GVGRFSHTINNGQRHSTLTALLNKS-KKPNLFVLKNAIVTKILTENNTVLGVKVIKQGKE 195
G G TI+ G+R S A L+ + + NL +V+++L E +GV+ +K G+
Sbjct: 224 GFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLFEGTRAVGVEYVKNGQS 283
Query: 196 LKFFTNKEVVISAGTFNTAKLLYLSGIGPKDHLDSLGIDVVQDLP-VGDNLQDHVMI 363
+ + +KEV++S G N+ +LL LSGIG D L LGI VV LP VG NLQDH+ I
Sbjct: 284 HRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEI 340
>AJ272267-1|CAB75961.1| 482|Homo sapiens choline dehydrogenase
protein.
Length = 482
Score = 86.6 bits (205), Expect = 5e-17
Identities = 48/117 (41%), Positives = 69/117 (58%), Gaps = 2/117 (1%)
Frame = +1
Query: 19 GVGRFSHTINNGQRHSTLTALLNKS-KKPNLFVLKNAIVTKILTENNTVLGVKVIKQGKE 195
G G TI+ G+R S A L+ + + NL +V+++L E +GV+ +K G+
Sbjct: 112 GFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLFEGTRAVGVEYVKNGQS 171
Query: 196 LKFFTNKEVVISAGTFNTAKLLYLSGIGPKDHLDSLGIDVVQDLP-VGDNLQDHVMI 363
+ + +KEV++S G N+ +LL LSGIG D L LGI VV LP VG NLQDH+ I
Sbjct: 172 HRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEI 228
>EF488684-1|ABO43042.1| 1424|Homo sapiens nuclear receptor
coactivator 3 protein.
Length = 1424
Score = 29.9 bits (64), Expect = 6.4
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 317 TTSIPKESKWSLGPIPDKYNNFAVLKVPADITTSLFVKNFSSFPCL 180
T S+ +S S+ I YN L P + +S VKN S+FP L
Sbjct: 834 TNSLGLKSSQSVQSIRPPYNRAVSLDSPVSVGSSPPVKNISAFPML 879
>BC122547-1|AAI22548.1| 1419|Homo sapiens nuclear receptor
coactivator 3 protein.
Length = 1419
Score = 29.9 bits (64), Expect = 6.4
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 317 TTSIPKESKWSLGPIPDKYNNFAVLKVPADITTSLFVKNFSSFPCL 180
T S+ +S S+ I YN L P + +S VKN S+FP L
Sbjct: 834 TNSLGLKSSQSVQSIRPPYNRAVSLDSPVSVGSSPPVKNISAFPML 879
>BC119001-1|AAI19002.1| 1420|Homo sapiens nuclear receptor
coactivator 3 protein.
Length = 1420
Score = 29.9 bits (64), Expect = 6.4
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 317 TTSIPKESKWSLGPIPDKYNNFAVLKVPADITTSLFVKNFSSFPCL 180
T S+ +S S+ I YN L P + +S VKN S+FP L
Sbjct: 834 TNSLGLKSSQSVQSIRPPYNRAVSLDSPVSVGSSPPVKNISAFPML 879
>BC092516-1|AAH92516.1| 1422|Homo sapiens nuclear receptor
coactivator 3 protein.
Length = 1422
Score = 29.9 bits (64), Expect = 6.4
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 317 TTSIPKESKWSLGPIPDKYNNFAVLKVPADITTSLFVKNFSSFPCL 180
T S+ +S S+ I YN L P + +S VKN S+FP L
Sbjct: 834 TNSLGLKSSQSVQSIRPPYNRAVSLDSPVSVGSSPPVKNISAFPML 879
>AL034418-3|CAI42141.1| 1420|Homo sapiens nuclear receptor
coactivator 3 protein.
Length = 1420
Score = 29.9 bits (64), Expect = 6.4
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 317 TTSIPKESKWSLGPIPDKYNNFAVLKVPADITTSLFVKNFSSFPCL 180
T S+ +S S+ I YN L P + +S VKN S+FP L
Sbjct: 834 TNSLGLKSSQSVQSIRPPYNRAVSLDSPVSVGSSPPVKNISAFPML 879
>AL034418-2|CAC17693.1| 1424|Homo sapiens nuclear receptor
coactivator 3 protein.
Length = 1424
Score = 29.9 bits (64), Expect = 6.4
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 317 TTSIPKESKWSLGPIPDKYNNFAVLKVPADITTSLFVKNFSSFPCL 180
T S+ +S S+ I YN L P + +S VKN S+FP L
Sbjct: 834 TNSLGLKSSQSVQSIRPPYNRAVSLDSPVSVGSSPPVKNISAFPML 879
>AL034418-1|CAB40662.1| 1415|Homo sapiens nuclear receptor
coactivator 3 protein.
Length = 1415
Score = 29.9 bits (64), Expect = 6.4
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 317 TTSIPKESKWSLGPIPDKYNNFAVLKVPADITTSLFVKNFSSFPCL 180
T S+ +S S+ I YN L P + +S VKN S+FP L
Sbjct: 844 TNSLGLKSSQSVQSIRPPYNRAVSLDSPVSVGSSPPVKNISAFPML 889
>AF036892-1|AAB92368.1| 1412|Homo sapiens nuclear receptor
coactivator protein.
Length = 1412
Score = 29.9 bits (64), Expect = 6.4
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 317 TTSIPKESKWSLGPIPDKYNNFAVLKVPADITTSLFVKNFSSFPCL 180
T S+ +S S+ I YN L P + +S VKN S+FP L
Sbjct: 844 TNSLGLKSSQSVQSIRPPYNRAVSLDSPVSVGSSPPVKNISAFPML 889
>AF016031-1|AAC51849.1| 1424|Homo sapiens thyroid hormone receptor
activator molecule protein.
Length = 1424
Score = 29.9 bits (64), Expect = 6.4
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 317 TTSIPKESKWSLGPIPDKYNNFAVLKVPADITTSLFVKNFSSFPCL 180
T S+ +S S+ I YN L P + +S VKN S+FP L
Sbjct: 834 TNSLGLKSSQSVQSIRPPYNRAVSLDSPVSVGSSPPVKNISAFPML 879
>AF012108-1|AAC51677.1| 1420|Homo sapiens Amplified in Breast Cancer
protein.
Length = 1420
Score = 29.9 bits (64), Expect = 6.4
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 317 TTSIPKESKWSLGPIPDKYNNFAVLKVPADITTSLFVKNFSSFPCL 180
T S+ +S S+ I YN L P + +S VKN S+FP L
Sbjct: 834 TNSLGLKSSQSVQSIRPPYNRAVSLDSPVSVGSSPPVKNISAFPML 879
>AF010227-1|AAC51663.1| 1417|Homo sapiens receptor-associated
coactivator 3 protein.
Length = 1417
Score = 29.9 bits (64), Expect = 6.4
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 317 TTSIPKESKWSLGPIPDKYNNFAVLKVPADITTSLFVKNFSSFPCL 180
T S+ +S S+ I YN L P + +S VKN S+FP L
Sbjct: 834 TNSLGLKSSQSVQSIRPPYNRAVSLDSPVSVGSSPPVKNISAFPML 879
>AB209863-1|BAD93100.1| 1427|Homo sapiens nuclear receptor
coactivator 3 isoform a variant protein.
Length = 1427
Score = 29.9 bits (64), Expect = 6.4
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 317 TTSIPKESKWSLGPIPDKYNNFAVLKVPADITTSLFVKNFSSFPCL 180
T S+ +S S+ I YN L P + +S VKN S+FP L
Sbjct: 838 TNSLGLKSSQSVQSIRPPYNRAVSLDSPVSVGSSPPVKNISAFPML 883
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.137 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,304,211
Number of Sequences: 237096
Number of extensions: 1459288
Number of successful extensions: 2715
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2713
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5646880600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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