Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L04
         (561 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical pr...    77   7e-15
Z32682-4|CAA83612.1|  218|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AC024696-12|AAK84511.1|  316|Caenorhabditis elegans Hypothetical...    29   1.7  
AC006697-2|AAF60391.1|  316|Caenorhabditis elegans Hypothetical ...    29   1.7  
U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical pr...    28   4.0  
AF022980-10|AAG24193.1|  350|Caenorhabditis elegans Serpentine r...    27   7.0  
Z71186-7|CAM35835.1|  552|Caenorhabditis elegans Hypothetical pr...    27   9.2  
CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical
           protein C34C6.4 protein.
          Length = 599

 Score = 77.4 bits (182), Expect = 7e-15
 Identities = 48/133 (36%), Positives = 74/133 (55%), Gaps = 14/133 (10%)
 Frame = +1

Query: 7   GEKI-GVGRFSHTINNGQRHSTLTALLNKSK-KPNLFVLKNAIVTKILTENNTVLGVKVI 180
           GEK  G+     TI+NG+R S   A ++  + +PNL        T++L + N  +G++ I
Sbjct: 214 GEKQEGISTMDMTIHNGERWSASKAYVHPIRNRPNLITSSGITCTRVLFDTNKAIGIEFI 273

Query: 181 KQ----GKEL-------KFFTNKEVVISAGTFNTAKLLYLSGIGPKDHLDSLGIDVVQDL 327
           ++    G +        K +   +V+++ G  NT +LL LSG+GP DHL S  I +V +L
Sbjct: 274 RKLNFVGTDSIDSYSREKIYCQGDVILAGGAINTPQLLMLSGVGPADHLRSHEIPIVANL 333

Query: 328 P-VGDNLQDHVMI 363
           P VG NLQDH+ I
Sbjct: 334 PGVGQNLQDHLEI 346


>Z32682-4|CAA83612.1|  218|Caenorhabditis elegans Hypothetical
           protein M04D8.4 protein.
          Length = 218

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 313 VVQDLPVGDNLQDHVMILTYIAV 381
           V +D+PV D + D ++IL YIAV
Sbjct: 75  VQKDIPVSDRVTDKIVILCYIAV 97


>AC024696-12|AAK84511.1|  316|Caenorhabditis elegans Hypothetical
           protein F07B7.2 protein.
          Length = 316

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 547 CKQDRSHIQVNLAHLCSRVNKQPCFHV 467
           CK+DR  ++V+L ++ +R  +  CF V
Sbjct: 142 CKRDREDVRVSLENIINRCTRNTCFSV 168


>AC006697-2|AAF60391.1|  316|Caenorhabditis elegans Hypothetical
           protein W09B7.2 protein.
          Length = 316

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 547 CKQDRSHIQVNLAHLCSRVNKQPCFHV 467
           CK+DR  ++V+L ++ +R  +  CF V
Sbjct: 142 CKRDREDVRVSLENIINRCTRNTCFSV 168


>U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical
           protein F48C1.1 protein.
          Length = 1064

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 79  LLNKSKKPNLFVLKNAIVTKILTENNT 159
           L N  K PN+F  KN +  + LTE++T
Sbjct: 81  LSNSQKNPNIFEPKNEVCQRPLTESST 107


>AF022980-10|AAG24193.1|  350|Caenorhabditis elegans Serpentine
           receptor, class j protein44 protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -2

Query: 200 FSSFPCLITLTPRTVLFSVRILVTIAFLRTNKLGFFDLLSRAVSVLCLCPLF 45
           FS  PCL+     + +F +++   + +L    LG F  +     +LCL P+F
Sbjct: 260 FSFSPCLLCWY--SPIFGIKLDRWLNYLEVTALGLFSFMDPIAIILCL-PIF 308


>Z71186-7|CAM35835.1|  552|Caenorhabditis elegans Hypothetical
           protein F23D12.10 protein.
          Length = 552

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +1

Query: 445 NRSGSLSRHESMAAYLPLNKDVPNLPEYGFYPVCI 549
           N SG L  H S       +K VPN P +G YP  I
Sbjct: 77  NLSGILELHSSFDLTNTTSKSVPNTP-FGEYPTMI 110


>CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical
           protein C42C1.1 protein.
          Length = 347

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 441 KISDNIHSFCRLIRYASTIIY 379
           +ISDNIH +   IR+AS+I +
Sbjct: 209 QISDNIHFYFFFIRFASSIFF 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.137    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,166,659
Number of Sequences: 27780
Number of extensions: 239178
Number of successful extensions: 625
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)