Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L04
(561 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g73050.1 68414.m08447 (R)-mandelonitrile lyase, putative / (R... 55 3e-08
At1g14185.1 68414.m01678 glucose-methanol-choline (GMC) oxidored... 52 2e-07
At1g12570.1 68414.m01459 glucose-methanol-choline (GMC) oxidored... 50 1e-06
At5g51930.1 68418.m06442 glucose-methanol-choline (GMC) oxidored... 49 2e-06
At1g14190.1 68414.m01679 glucose-methanol-choline (GMC) oxidored... 47 7e-06
At5g51950.1 68418.m06447 glucose-methanol-choline (GMC) oxidored... 45 3e-05
At1g72970.1 68414.m08439 glucose-methanol-choline (GMC) oxidored... 45 3e-05
At3g56060.1 68416.m06229 glucose-methanol-choline (GMC) oxidored... 41 7e-04
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 29 1.6
At5g04770.1 68418.m00492 amino acid permease family protein simi... 29 2.1
At3g53680.1 68416.m05928 PHD finger transcription factor, putati... 29 2.8
At3g10600.1 68416.m01275 amino acid permease family protein simi... 29 2.8
At4g36360.2 68417.m05164 beta-galactosidase, putative / lactase,... 28 3.7
At4g36360.1 68417.m05163 beta-galactosidase, putative / lactase,... 28 3.7
At1g74120.1 68414.m08584 mitochondrial transcription termination... 28 4.9
At4g28010.1 68417.m04018 pentatricopeptide (PPR) repeat-containi... 27 6.5
At4g17730.1 68417.m02647 syntaxin 23 (SYP23) / PEP12-like protei... 27 6.5
At2g30710.1 68415.m03746 RabGAP/TBC domain-containing protein si... 27 8.6
At1g80080.1 68414.m09374 leucine-rich repeat family protein cont... 27 8.6
At1g30010.1 68414.m03670 intron maturase, type II family protein... 27 8.6
>At1g73050.1 68414.m08447 (R)-mandelonitrile lyase, putative /
(R)-oxynitrilase, putative similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|52707];
contains Pfam protile PF00732 GMC oxidoreductase
Length = 552
Score = 55.2 bits (127), Expect = 3e-08
Identities = 43/128 (33%), Positives = 66/128 (51%), Gaps = 12/128 (9%)
Frame = +1
Query: 7 GEKIGVGRFSHTINNGQRHSTLTALLNKSKKPNLFVLKNAIVTKIL------TENNTVLG 168
G KIG F T G+RHS+ LL ++ N+ V A V ++L + V
Sbjct: 207 GTKIGGSTFDRT---GRRHSSAD-LLRYARSSNIRVAVYATVERVLLASSPSVSGSNVSA 262
Query: 169 VKVIKQGKELKFF-----TNKEVVISAGTFNTAKLLYLSGIGPKDHLDSLGIDVVQDLP- 330
+ V+ + + +F EV++SAG + +LL+LSGIGP+ +L + GI V D P
Sbjct: 263 IGVVYRDQLGRFHHALIRDRGEVILSAGALGSPQLLFLSGIGPRSYLSTWGIPVALDQPH 322
Query: 331 VGDNLQDH 354
VGD + D+
Sbjct: 323 VGDFVYDN 330
>At1g14185.1 68414.m01678 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 503
Score = 52.4 bits (120), Expect = 2e-07
Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 10/130 (7%)
Frame = +1
Query: 4 RGEKIGVGRFSHTINNGQRHSTLTALLNKSKKPNLFVLKNAIVTKILTENNTV--LGVKV 177
+G KIG F G+RH T LL K + VL NA V I+ + N +GV+
Sbjct: 187 QGTKIGGSIFDQC---GKRH-TSADLLGYGKPNCITVLLNATVKSIIFDANKTRAVGVRF 242
Query: 178 IKQ----GKELKFFTNK---EVVISAGTFNTAKLLYLSGIGPKDHLDSLGIDVVQDL-PV 333
++ K K + EV+++AG + ++L LSGIGP++HL+ I V+ +L V
Sbjct: 243 MESDGNSSKSYKVHVEQHRGEVILAAGALGSPQILLLSGIGPENHLNDFDIPVIVNLKEV 302
Query: 334 GDNLQDHVMI 363
G + D+ I
Sbjct: 303 GKQMSDNPAI 312
>At1g12570.1 68414.m01459 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 572
Score = 49.6 bits (113), Expect = 1e-06
Identities = 43/129 (33%), Positives = 63/129 (48%), Gaps = 13/129 (10%)
Frame = +1
Query: 28 RFSHTI--NNGQRHSTLTALLNKSKKPNLFVLKNAIVTKIL--TENNTV-LGVKVIKQGK 192
+F TI NG RH T LL + + VL +A V +IL T T + V+ + +
Sbjct: 198 KFGGTIFDRNGNRH-TAADLLEYADPKGITVLLHATVHRILFRTRGTTKPIANGVVYRDR 256
Query: 193 E-------LKFFTNKEVVISAGTFNTAKLLYLSGIGPKDHLDSLGIDVVQDLP-VGDNLQ 348
LK E+++SAGT + +LL LSG+GP L + I VV D P VG +
Sbjct: 257 TGQAHRAYLKEGALSEIILSAGTLGSPQLLMLSGVGPSAQLQAQNITVVMDQPHVGQGMY 316
Query: 349 DHVMILTYI 375
D+ M ++
Sbjct: 317 DNPMNAVFV 325
>At5g51930.1 68418.m06442 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 582
Score = 49.2 bits (112), Expect = 2e-06
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 6/150 (4%)
Frame = +1
Query: 7 GEKIGVGRFSHTINNGQRHSTLTALLNKSKKPNLFVLKNAIVTKIL--TENNTVL--GVK 174
G KIG F G RH T LL + + V +A V K+L TE VL
Sbjct: 223 GTKIGGTIFDRA---GHRH-TAANLLEYANPNRIVVYLHASVHKVLFTTEAYEVLFEDAN 278
Query: 175 VIKQGKELKFFTNKEVVISAGTFNTAKLLYLSGIGPKDHLDSLGID-VVQDLP-VGDNLQ 348
+ L EV++SAG + +LL LSG+GP HL++ G++ +V D P VG +
Sbjct: 279 GVFHKANLANKATNEVILSAGALGSPQLLMLSGVGPAVHLEAHGVNPLVLDQPMVGQGMA 338
Query: 349 DHVMILTYIAVDNGTCIPDESTEAMDVIRY 438
D+ M ++A+ + + +A+ + ++
Sbjct: 339 DNPM--NFVAIPSPQPVELSLIQAVGITKF 366
>At1g14190.1 68414.m01679 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 501
Score = 47.2 bits (107), Expect = 7e-06
Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 11/131 (8%)
Frame = +1
Query: 4 RGEKIGVGRFSHTINNGQRHSTLTALLNKSKKPNLFVLKNAIVTKIL--TENNT-VLGVK 174
+G KIG + G+RH T LL K + VL N V I+ + N T +GV+
Sbjct: 166 QGTKIGGSIYDQC---GKRH-TSADLLGFGKPNCITVLLNTTVKSIIFDSSNKTRAVGVR 221
Query: 175 VIKQ----GKELKFFTNK---EVVISAGTFNTAKLLYLSGIGPKDHLDSLGIDVVQDL-P 330
++ K K + EV+++AG + ++L LSGIGP++HL I V+ +L
Sbjct: 222 FMESDGNSSKSYKVHVEQHRGEVILAAGALGSPQILLLSGIGPENHLKDFDIPVIVNLKE 281
Query: 331 VGDNLQDHVMI 363
VG + D+ I
Sbjct: 282 VGRKMSDNPAI 292
>At5g51950.1 68418.m06447 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 586
Score = 45.2 bits (102), Expect = 3e-05
Identities = 47/135 (34%), Positives = 62/135 (45%), Gaps = 12/135 (8%)
Frame = +1
Query: 7 GEKIGVGRFSHTINNGQRHSTLTALLNKSKKPNLFVLKNAIVTKILTENN-----TVLGV 171
G KIG F G RH T LL + N+ V +A V KIL GV
Sbjct: 196 GTKIGGTIFDRA---GHRH-TAADLLEYANPGNIVVYLHASVHKILFTTKGRPRPKAYGV 251
Query: 172 -----KVIKQGKELKFFTNKEVVISAGTFNTAKLLYLSGIGPKDHLDSLGI-DVVQDLP- 330
+ EL+ + EV++SAG + +LL LSGIGP HL + GI +V D P
Sbjct: 252 IFQDANGVLHKAELEKNSMNEVILSAGAIGSPQLLMLSGIGPAAHLAAHGIKPLVLDHPM 311
Query: 331 VGDNLQDHVMILTYI 375
VG + D+ M +I
Sbjct: 312 VGQGMGDNPMNAIFI 326
>At1g72970.1 68414.m08439 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 594
Score = 45.2 bits (102), Expect = 3e-05
Identities = 45/128 (35%), Positives = 63/128 (49%), Gaps = 10/128 (7%)
Frame = +1
Query: 7 GEKIGVGRFSHTINNGQRHSTLTALLNKSKKPNLFVLKNAIVTKILTENN----TVLGV- 171
G KIG F G+RH T LL + L VL A V KI+ + + V GV
Sbjct: 213 GTKIGGTIFDRF---GRRH-TAAELLAYANPQKLRVLIYATVQKIVFDTSGTRPRVTGVI 268
Query: 172 -KVIKQGKELKFFTNK---EVVISAGTFNTAKLLYLSGIGPKDHLDSLGIDVV-QDLPVG 336
K K + +N+ EV++S+G + ++L LSGIGPK L L I VV ++ VG
Sbjct: 269 FKDEKGNQHQALLSNRKGSEVILSSGAIGSPQMLMLSGIGPKKELQRLKIPVVLENEHVG 328
Query: 337 DNLQDHVM 360
+ D+ M
Sbjct: 329 KGMADNPM 336
>At3g56060.1 68416.m06229 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 577
Score = 40.7 bits (91), Expect = 7e-04
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Frame = +1
Query: 208 TNKEVVISAGTFNTAKLLYLSGIGPKDHLDSLGID-VVQDLP-VGDNLQDHVMILTYI 375
T EV++SAG + +LL LSG+GP HL + ++ V+ D P VG + D+ M +I
Sbjct: 271 TMSEVILSAGAIASPQLLMLSGVGPAAHLAAYRVNPVIVDQPMVGQGMGDNPMNPVFI 328
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 103 NLFVLKNAIVTKILTENNTVLGVKVIKQGKELKFFTNKEVVISAGT 240
NL AI ILT +VLG + +K GK+ T K+++I+ G+
Sbjct: 182 NLTNSMKAIGVDILTGFGSVLGPQKVKYGKD-NIITAKDIIIATGS 226
>At5g04770.1 68418.m00492 amino acid permease family protein similar
to cationic amino acid transporter-1 [Rattus norvegicus]
GI:1589917; contains Pfam profile PF00324: Amino acid
permease
Length = 583
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Frame = +1
Query: 229 SAGTFNTAKLLYLSGIGPKDHLDSLGIDV---VQDLPVG 336
+AG FN A ++YLS IG D + ++ +V V+D+PVG
Sbjct: 260 AAGVFNGAAMVYLSYIG-YDAVSTMAEEVENPVKDIPVG 297
>At3g53680.1 68416.m05928 PHD finger transcription factor, putative
predicted proteins, Arabidopsis thaliana
Length = 839
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +1
Query: 154 NTVLGVKVIKQGKELKFFTNKEVVISAGTFNTAKLLYLS 270
++ LGVK++K+ F +N + ++ G + A++ YLS
Sbjct: 166 SSTLGVKMLKKIDSTNFLSNVKKLLGTGILDGARVKYLS 204
>At3g10600.1 68416.m01275 amino acid permease family protein similar
to SP|Q09143 High-affinity cationic amino acid
transporter-1 (CAT-1) {Mus musculus}; contains Pfam
profile PF00324: Amino acid permease
Length = 584
Score = 28.7 bits (61), Expect = 2.8
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Frame = +1
Query: 232 AGTFNTAKLLYLSGIGPKDHLDSLGIDV---VQDLPVGDNLQDHVMILTY--IAVDNGTC 396
+G FN A ++YLS IG D + ++ +V V+D+P+G + ++I+ Y +A+
Sbjct: 260 SGVFNGAAMVYLSYIG-YDAVSTMAEEVKDPVKDIPMGISGSVAIVIVLYCLMAISMSML 318
Query: 397 IPDESTEA 420
+P + +A
Sbjct: 319 LPYDLIDA 326
>At4g36360.2 68417.m05164 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase precursor
SP:P48980 from [Lycopersicon esculentum]
Length = 855
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -1
Query: 510 HIFVQG*ISSHAFMSRQRSRPIVKISDNIHSFCRLIRYASTII 382
HIFV G +S AF +RQ R + N+HS I S +
Sbjct: 510 HIFVNGQLSGSAFGTRQNRRFTYQGKINLHSGTNRIALLSVAV 552
>At4g36360.1 68417.m05163 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase precursor
SP:P48980 from [Lycopersicon esculentum]
Length = 856
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -1
Query: 510 HIFVQG*ISSHAFMSRQRSRPIVKISDNIHSFCRLIRYASTII 382
HIFV G +S AF +RQ R + N+HS I S +
Sbjct: 510 HIFVNGQLSGSAFGTRQNRRFTYQGKINLHSGTNRIALLSVAV 552
>At1g74120.1 68414.m08584 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 445
Score = 27.9 bits (59), Expect = 4.9
Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 5/101 (4%)
Frame = -2
Query: 353 WSCKLSPTGKSWTTSIPK-----ESKWSLGPIPDKYNNFAVLKVPADITTSLFVKNFSSF 189
W LS GK S E +G PDK+N + S + SSF
Sbjct: 112 WRVPLSNCGKHGVVSSSAIKSVLEHSSRIGIGPDKFNECVRVLKSLGFCDSTVSRILSSF 171
Query: 188 PCLITLTPRTVLFSVRILVTIAFLRTNKLGFFDLLSRAVSV 66
P ++ + + + LV I R N FF + + +
Sbjct: 172 PGVLLVNEIEIRRKIEFLVGIGIARDNIERFFHVFPEVLGI 212
>At4g28010.1 68417.m04018 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 704
Score = 27.5 bits (58), Expect = 6.5
Identities = 29/133 (21%), Positives = 61/133 (45%)
Frame = +1
Query: 70 LTALLNKSKKPNLFVLKNAIVTKILTENNTVLGVKVIKQGKELKFFTNKEVVISAGTFNT 249
L ++ K ++PN V N I+ K+ + V++++ K+ + T + + T+N
Sbjct: 340 LNLMIEKDEEPNA-VTYNIIINKLCKDGLVADAVEIVELMKKRR--TRPDNI----TYN- 391
Query: 250 AKLLYLSGIGPKDHLDSLGIDVVQDLPVGDNLQDHVMILTYIAVDNGTCIPDESTEAMDV 429
+ L G+ K LD + L + D+ +++Y A+ +G C + +A+D+
Sbjct: 392 ---ILLGGLCAKGDLDEAS--KLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDI 446
Query: 430 IRYLYNRSGSLSR 468
L + G+ R
Sbjct: 447 YDLLVEKLGAGDR 459
>At4g17730.1 68417.m02647 syntaxin 23 (SYP23) / PEP12-like protein
identical to SP|O04378 Syntaxin 23 (AtSYP23) (AtPLP)
(AtPEP12-like protein) {Arabidopsis thaliana}
Length = 255
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 49 NGQRHSTLTALLNKSKKPNLFVLKNAIVTKILTENNTVLGVKVIKQ--GKELKFFTNKEV 222
NG +H ALL +SK+ L +L N I G++ I+Q G+ + F + V
Sbjct: 154 NGDKHPEQRALLVESKRQELVLLDNEIAFNEAVIEEREQGIQEIQQQIGEVHEIFKDLAV 213
Query: 223 VI 228
++
Sbjct: 214 LV 215
>At2g30710.1 68415.m03746 RabGAP/TBC domain-containing protein
similar to SP|Q08484 GTPase-activating protein GYP1
{Saccharomyces cerevisiae}; contains Pfam profile
PF00566: TBC domain
Length = 440
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 286 DHLDSLGIDVVQDLPVGDNLQDHVMILTYIAVDNGTCIPDES 411
++L+S+G DLP + D + +L IAVD +PD S
Sbjct: 177 EYLESVG--QFYDLPDSERSDDEINMLRQIAVDCPRTVPDVS 216
>At1g80080.1 68414.m09374 leucine-rich repeat family protein
contains leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611; contains some similarity to Hcr2-5D
[Lycopersicon esculentum] gi|3894393|gb|AAC78596
Length = 496
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 341 LSPTGKSWTTSIPKESKWSLGPIPDKYNNFAVLKV 237
L G S T + +E+ + LGPIPD+ N LKV
Sbjct: 154 LGRLGSSLQTLVLRENGF-LGPIPDELGNLTNLKV 187
>At1g30010.1 68414.m03670 intron maturase, type II family protein
similar to SP|Q57005 Group II intron-encoded protein
ltrA {Lactococcus lactis subsp}; contains Pfam profiles
PF01348: Type II intron maturase, PF00078: Reverse
transcriptase (RNA-dependent DNA polymerase
Length = 711
Score = 27.1 bits (57), Expect = 8.6
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -2
Query: 254 FAVLKV-PADITTSLFVKNFSSFPCLITLTPRTVLFSVRILVTIAFLRT 111
+++LK P DI SL+VK+FSS P T + T S L +A+ RT
Sbjct: 50 YSLLKQDPVDICLSLWVKSFSS-PPSATFSNLTGFLSKFDLWVLAYQRT 97
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.137 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,357,490
Number of Sequences: 28952
Number of extensions: 218593
Number of successful extensions: 680
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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