Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L03
         (289 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    20   6.1  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    20   6.1  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    19   8.0  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +3

Query: 6   GEERRLQSPKKEDCNRRRKKTAIAEERRLQSPKKE 110
           GE++    PK ED      +    E+++ +   KE
Sbjct: 237 GEDKDKDKPKIEDVGEDEDEDTKKEDKKKKKTIKE 271



 Score = 19.4 bits (38), Expect = 8.0
 Identities = 12/59 (20%), Positives = 23/59 (38%)
 Frame = +2

Query: 101 EERKLQSPKNENCNRRRKKTAIAEERRPQSPKKEDCNRRRKKTAIAEERRLQSPKKEDL 277
           EE K++    ++         +  E+  +    +D     KK    E++    PK ED+
Sbjct: 192 EEHKIKEIVKKHSQFIGYPIKLVVEKEREKELSDDEAEEEKKEEEGEDKDKDKPKIEDV 250


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 93  QSPKKENCNRRRMKTAIAEERRLQSPKKEDRNR 191
           +S ++EN   RR++TA    + L+  K+   N+
Sbjct: 126 KSSQQENGLPRRLRTAYTNTQLLELEKEFHFNK 158


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 20  TAIAEERRLQSPKKEDCNRRRKKIAIAEERKL 115
           T   +++ L+SP          KI  AE+RKL
Sbjct: 242 TTCNKKQHLESPSALQAKVDPLKIPEAEKRKL 273


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,398
Number of Sequences: 336
Number of extensions: 1549
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5003479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)