Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L02
(535 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31174| Best HMM Match : LIM_bind (HMM E-Value=0) 148 3e-36
SB_28884| Best HMM Match : SAM_2 (HMM E-Value=1.4e-24) 30 1.0
SB_34949| Best HMM Match : ANF_receptor (HMM E-Value=0) 28 5.5
SB_25318| Best HMM Match : fn3 (HMM E-Value=2e-15) 28 5.5
SB_15694| Best HMM Match : RNA_POL_M_15KD (HMM E-Value=2.9) 27 7.3
SB_45253| Best HMM Match : ig (HMM E-Value=0.00016) 27 7.3
SB_7458| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_54807| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_22294| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_31174| Best HMM Match : LIM_bind (HMM E-Value=0)
Length = 609
Score = 148 bits (358), Expect = 3e-36
Identities = 62/80 (77%), Positives = 75/80 (93%)
Frame = +2
Query: 290 IGRTLIPRYFRSIYEGGVSELYYTMRQPKESFHNTSITLDCDHCTMVTHHGKPIFTKVCT 469
IGRTLIPRYFRSI+EGGV+ELYY + QPKES+HNT+ITLDC++ TM+T H KP++TKVCT
Sbjct: 391 IGRTLIPRYFRSIFEGGVTELYYHLLQPKESYHNTTITLDCENTTMITSHIKPVYTKVCT 450
Query: 470 EGRLILEFTFDDLMRIKSWH 529
EGRLILEFTFDD+MRI++WH
Sbjct: 451 EGRLILEFTFDDMMRIRNWH 470
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +2
Query: 137 DYRVYELNKRLQQRTE 184
D R+YELN+RLQQRTE
Sbjct: 274 DVRIYELNRRLQQRTE 289
>SB_28884| Best HMM Match : SAM_2 (HMM E-Value=1.4e-24)
Length = 257
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 437 HGKPIFTKVCTEGRLILEFTFDDLMRIK 520
H K F+ C +GR++ T DDL +K
Sbjct: 10 HYKDAFSDACVDGRMLNHLTLDDLQHLK 37
>SB_34949| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 879
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 146 VYELNKRLQQRTEDSDNLWWDAF-ATEFFEDDA 241
VYE + R+ + N WWD F A+EF D++
Sbjct: 319 VYEAHLRMLSAADTRGNPWWDEFWASEFGCDNS 351
>SB_25318| Best HMM Match : fn3 (HMM E-Value=2e-15)
Length = 911
Score = 27.9 bits (59), Expect = 5.5
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = +1
Query: 274 T*KIYNRKDADTSLLSQYIRGWRFRIVLYNAATQGVISQH*HHFRL*SLHDGHASRETDF 453
T +YN +++ + QY W + +YN Q +S + F +L G+ SRE +
Sbjct: 300 TWSLYNPDESNMPIAFQYHAPWDSFLKVYNTRYQPRLSAENNGFNT-TLVVGNMSREDE- 357
Query: 454 Y*GVHGRQVDIR 489
GV G QV +R
Sbjct: 358 --GVFGCQVLVR 367
>SB_15694| Best HMM Match : RNA_POL_M_15KD (HMM E-Value=2.9)
Length = 239
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 362 MRQPKESFHNTSITLDCDHCTMVTHHGKPIFTKVCTEGRLIL 487
M++ + + SITL+C +T H P + EG L+L
Sbjct: 93 MKETENEGYQFSITLNCLEGCNITWHSPPPLPNIKGEGNLLL 134
>SB_45253| Best HMM Match : ig (HMM E-Value=0.00016)
Length = 678
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 185 DSDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTI 292
D ++WW + E DA L+L + D +RY +
Sbjct: 368 DDGSVWWVSHERESLRADAVLSLVLEMVDPDRRYRL 403
>SB_7458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 96 PLLTGGTRHISANQTTEFTNSTSGYNKGQKIQII 197
PL G ++H + T ST+ YN K QII
Sbjct: 28 PLTRGSSKHANCQTTFSTDMSTNKYNTRNKTQII 61
>SB_54807| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Frame = +2
Query: 350 LYYTMRQPKESFHNTSITLDCDH----CTMVTHHGKPIFTKVCTEGRLILE 490
L+ T R+P + + + + H C HH KP C GR +LE
Sbjct: 7 LWITRRKPNYALPHKRVIPEALHILPFCLEDIHHAKPKHRGTCLGGRYVLE 57
>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6119
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 305 IPRYFRSIYEGGVSELYYTMRQPKESFHNTSI 400
IPRY + Y+G V +L + QP++ T +
Sbjct: 3182 IPRYIKPFYDGEVCKLTFYETQPEDEGDYTCV 3213
>SB_22294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 494
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 185 DSDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTI 292
D ++WW + E DA L L + D +RY +
Sbjct: 133 DDGSVWWVSHERESLRADAVLPLVLGMVDPDRRYRL 168
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,064,393
Number of Sequences: 59808
Number of extensions: 260223
Number of successful extensions: 732
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -