Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L02
         (535 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058561-1|AAL13790.1|  577|Drosophila melanogaster LD25129p pro...   252   2e-67
AF010325-1|AAB62574.1|  577|Drosophila melanogaster CHIP protein.     252   2e-67
AE013599-3781|AAF47142.1|  577|Drosophila melanogaster CG3924-PA...   252   2e-67
AE013599-3780|AAM68293.2|  596|Drosophila melanogaster CG3924-PB...   252   2e-67
AF010328-1|AAB62577.1|  365|Drosophila melanogaster short form o...   165   3e-41
AY061206-1|AAL28754.1|  683|Drosophila melanogaster LD15650p pro...    28   9.2  
AE013599-3627|AAF47025.2|  623|Drosophila melanogaster CG3941-PB...    28   9.2  
AE013599-3626|AAF47026.3|  683|Drosophila melanogaster CG3941-PA...    28   9.2  

>AY058561-1|AAL13790.1|  577|Drosophila melanogaster LD25129p
           protein.
          Length = 577

 Score =  252 bits (618), Expect = 2e-67
 Identities = 107/142 (75%), Positives = 122/142 (85%)
 Frame = +2

Query: 107 RRHAPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 286
           RRH  YF   ++RV+ELNKRLQQR E+SDN WWD+F TEFFEDDA LT+ FCLEDGPKRY
Sbjct: 207 RRHNSYFSHTEHRVFELNKRLQQRNEESDNCWWDSFTTEFFEDDARLTILFCLEDGPKRY 266

Query: 287 TIGRTLIPRYFRSIYEGGVSELYYTMRQPKESFHNTSITLDCDHCTMVTHHGKPIFTKVC 466
           TIGRTLIPR+FRSIYEGGVS+LY+ ++  KESFHNTSITLDCD CT++T HGKP FTKVC
Sbjct: 267 TIGRTLIPRFFRSIYEGGVSDLYFQLKHAKESFHNTSITLDCDQCTVITQHGKPFFTKVC 326

Query: 467 TEGRLILEFTFDDLMRIKSWHM 532
            + RLILEF +DD MRIKSWHM
Sbjct: 327 ADARLILEFMYDDYMRIKSWHM 348


>AF010325-1|AAB62574.1|  577|Drosophila melanogaster CHIP protein.
          Length = 577

 Score =  252 bits (618), Expect = 2e-67
 Identities = 107/142 (75%), Positives = 122/142 (85%)
 Frame = +2

Query: 107 RRHAPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 286
           RRH  YF   ++RV+ELNKRLQQR E+SDN WWD+F TEFFEDDA LT+ FCLEDGPKRY
Sbjct: 207 RRHNSYFSHTEHRVFELNKRLQQRNEESDNCWWDSFTTEFFEDDARLTILFCLEDGPKRY 266

Query: 287 TIGRTLIPRYFRSIYEGGVSELYYTMRQPKESFHNTSITLDCDHCTMVTHHGKPIFTKVC 466
           TIGRTLIPR+FRSIYEGGVS+LY+ ++  KESFHNTSITLDCD CT++T HGKP FTKVC
Sbjct: 267 TIGRTLIPRFFRSIYEGGVSDLYFQLKHAKESFHNTSITLDCDQCTVITQHGKPFFTKVC 326

Query: 467 TEGRLILEFTFDDLMRIKSWHM 532
            + RLILEF +DD MRIKSWHM
Sbjct: 327 ADARLILEFMYDDYMRIKSWHM 348


>AE013599-3781|AAF47142.1|  577|Drosophila melanogaster CG3924-PA,
           isoform A protein.
          Length = 577

 Score =  252 bits (618), Expect = 2e-67
 Identities = 107/142 (75%), Positives = 122/142 (85%)
 Frame = +2

Query: 107 RRHAPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 286
           RRH  YF   ++RV+ELNKRLQQR E+SDN WWD+F TEFFEDDA LT+ FCLEDGPKRY
Sbjct: 207 RRHNSYFSHTEHRVFELNKRLQQRNEESDNCWWDSFTTEFFEDDARLTILFCLEDGPKRY 266

Query: 287 TIGRTLIPRYFRSIYEGGVSELYYTMRQPKESFHNTSITLDCDHCTMVTHHGKPIFTKVC 466
           TIGRTLIPR+FRSIYEGGVS+LY+ ++  KESFHNTSITLDCD CT++T HGKP FTKVC
Sbjct: 267 TIGRTLIPRFFRSIYEGGVSDLYFQLKHAKESFHNTSITLDCDQCTVITQHGKPFFTKVC 326

Query: 467 TEGRLILEFTFDDLMRIKSWHM 532
            + RLILEF +DD MRIKSWHM
Sbjct: 327 ADARLILEFMYDDYMRIKSWHM 348


>AE013599-3780|AAM68293.2|  596|Drosophila melanogaster CG3924-PB,
           isoform B protein.
          Length = 596

 Score =  252 bits (618), Expect = 2e-67
 Identities = 107/142 (75%), Positives = 122/142 (85%)
 Frame = +2

Query: 107 RRHAPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 286
           RRH  YF   ++RV+ELNKRLQQR E+SDN WWD+F TEFFEDDA LT+ FCLEDGPKRY
Sbjct: 226 RRHNSYFSHTEHRVFELNKRLQQRNEESDNCWWDSFTTEFFEDDARLTILFCLEDGPKRY 285

Query: 287 TIGRTLIPRYFRSIYEGGVSELYYTMRQPKESFHNTSITLDCDHCTMVTHHGKPIFTKVC 466
           TIGRTLIPR+FRSIYEGGVS+LY+ ++  KESFHNTSITLDCD CT++T HGKP FTKVC
Sbjct: 286 TIGRTLIPRFFRSIYEGGVSDLYFQLKHAKESFHNTSITLDCDQCTVITQHGKPFFTKVC 345

Query: 467 TEGRLILEFTFDDLMRIKSWHM 532
            + RLILEF +DD MRIKSWHM
Sbjct: 346 ADARLILEFMYDDYMRIKSWHM 367


>AF010328-1|AAB62577.1|  365|Drosophila melanogaster short form of
           CHIP protein.
          Length = 365

 Score =  165 bits (401), Expect = 3e-41
 Identities = 70/94 (74%), Positives = 81/94 (86%)
 Frame = +2

Query: 107 RRHAPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 286
           RRH  YF   ++RV+ELNKRLQQR E+SDN WWD+F TEFFEDDA LT+ FCLEDGPKRY
Sbjct: 207 RRHNSYFSHTEHRVFELNKRLQQRNEESDNCWWDSFTTEFFEDDARLTILFCLEDGPKRY 266

Query: 287 TIGRTLIPRYFRSIYEGGVSELYYTMRQPKESFH 388
           TIGRTLIPR+FRSIYEGGVS+LY+ ++  KESFH
Sbjct: 267 TIGRTLIPRFFRSIYEGGVSDLYFQLKHAKESFH 300



 Score = 33.9 bits (74), Expect = 0.14
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +1

Query: 400 HFRL*SLHDGHASRETDFY*GVHGRQVDIRVYV*RPDADQVVAH 531
           H  L  +H  HA+R+   + G+  R+ D+ V+V R  A QV+AH
Sbjct: 302 HVGLRPVHGDHAARQALLHEGLRRRKTDLGVHVRRLHAHQVMAH 345


>AY061206-1|AAL28754.1|  683|Drosophila melanogaster LD15650p
           protein.
          Length = 683

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 182 EDSDNLWWDAFATEFFEDDA 241
           ED DN+  + F TE+ EDDA
Sbjct: 594 EDMDNVKQEEFVTEYLEDDA 613


>AE013599-3627|AAF47025.2|  623|Drosophila melanogaster CG3941-PB,
           isoform B protein.
          Length = 623

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 182 EDSDNLWWDAFATEFFEDDA 241
           ED DN+  + F TE+ EDDA
Sbjct: 534 EDMDNVKQEEFVTEYLEDDA 553


>AE013599-3626|AAF47026.3|  683|Drosophila melanogaster CG3941-PA,
           isoform A protein.
          Length = 683

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 182 EDSDNLWWDAFATEFFEDDA 241
           ED DN+  + F TE+ EDDA
Sbjct: 594 EDMDNVKQEEFVTEYLEDDA 613


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,756,513
Number of Sequences: 53049
Number of extensions: 356163
Number of successful extensions: 633
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2012211456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)