Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L02
         (535 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41830.1 68415.m05169 cyclin-related contains Pfam profile PF...    29   1.9  
At1g43850.1 68414.m05052 SEUSS transcriptional co-regulator iden...    27   7.9  

>At2g41830.1 68415.m05169 cyclin-related contains Pfam profile
           PF02984: Cyclin, C-terminal domain
          Length = 1025

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = +2

Query: 146 VYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTI 292
           VYE+ K L+       +   +   TEF  DDA    T  LED  K Y I
Sbjct: 796 VYEIVKSLEDMCNSEMDKMREQLLTEFMPDDACPLGTRFLEDTHKTYQI 844


>At1g43850.1 68414.m05052 SEUSS transcriptional co-regulator
           identical to SEUSS transcriptional co-regulator
           [Arabidopsis thaliana] gi|18033922|gb|AAL57277
          Length = 877

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 21/75 (28%), Positives = 37/75 (49%)
 Frame = +2

Query: 302 LIPRYFRSIYEGGVSELYYTMRQPKESFHNTSITLDCDHCTMVTHHGKPIFTKVCTEGRL 481
           ++PR F+  YE G  E    +  P+ES  N+S  +  ++    T        +V  +G+L
Sbjct: 384 VLPRLFKIKYESGTLEELLYVDMPRES-QNSSGQIVLEY-AKATQESVFEHLRVVRDGQL 441

Query: 482 ILEFTFDDLMRIKSW 526
            + F+ D  ++I SW
Sbjct: 442 RIVFSPD--LKIFSW 454


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,483,207
Number of Sequences: 28952
Number of extensions: 167765
Number of successful extensions: 365
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)