Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L01
(511 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 294 3e-80
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 294 3e-80
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 293 6e-80
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 293 6e-80
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 274 2e-74
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 274 2e-74
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 263 5e-71
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 143 7e-35
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 141 2e-34
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 140 7e-34
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 140 7e-34
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 139 1e-33
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 138 2e-33
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 138 3e-33
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 137 5e-33
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 133 6e-32
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 103 7e-23
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 103 9e-23
At4g14510.1 68417.m02236 expressed protein contains Pfam domain,... 30 1.0
At2g17820.1 68415.m02064 histidine kinase 1 99% identical to GP:... 29 1.8
At1g75400.1 68414.m08759 expressed protein 28 3.2
At1g25510.1 68414.m03168 aspartyl protease family protein contai... 28 3.2
At3g29160.3 68416.m03654 Snf1-related protein kinase (KIN11) ide... 28 4.2
At3g29160.2 68416.m03653 Snf1-related protein kinase (KIN11) ide... 28 4.2
At3g29160.1 68416.m03652 Snf1-related protein kinase (KIN11) ide... 28 4.2
At5g04660.1 68418.m00474 cytochrome P450, putative cytochrome P4... 27 5.5
At3g13330.1 68416.m01678 expressed protein 27 5.5
At1g18260.1 68414.m02277 suppressor of lin-12-like protein-relat... 27 5.5
At5g47020.1 68418.m05795 glycine-rich protein strong similarity ... 27 9.7
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 27 9.7
At3g11960.2 68416.m01476 cleavage and polyadenylation specificit... 27 9.7
At3g11960.1 68416.m01475 cleavage and polyadenylation specificit... 27 9.7
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 294 bits (721), Expect = 3e-80
Identities = 127/143 (88%), Positives = 139/143 (97%)
Frame = +1
Query: 82 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 261
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP+DKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 262 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 441
HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 442 RIRKLADQCTGLQGFLIFQSFGG 510
RIRKLAD CTGLQGFL+F + GG
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGG 143
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 294 bits (721), Expect = 3e-80
Identities = 127/143 (88%), Positives = 139/143 (97%)
Frame = +1
Query: 82 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 261
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP+DKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 262 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 441
HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 442 RIRKLADQCTGLQGFLIFQSFGG 510
RIRKLAD CTGLQGFL+F + GG
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGG 143
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 293 bits (718), Expect = 6e-80
Identities = 127/143 (88%), Positives = 138/143 (96%)
Frame = +1
Query: 82 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 261
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 262 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 441
HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 442 RIRKLADQCTGLQGFLIFQSFGG 510
RIRKLAD CTGLQGFL+F + GG
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGG 143
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 293 bits (718), Expect = 6e-80
Identities = 127/143 (88%), Positives = 138/143 (96%)
Frame = +1
Query: 82 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 261
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 262 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 441
HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 442 RIRKLADQCTGLQGFLIFQSFGG 510
RIRKLAD CTGLQGFL+F + GG
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGG 143
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 274 bits (673), Expect = 2e-74
Identities = 118/143 (82%), Positives = 133/143 (93%)
Frame = +1
Query: 82 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 261
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSETGAGK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 262 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 441
HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYT+GKEIVDL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
Query: 442 RIRKLADQCTGLQGFLIFQSFGG 510
R+RKLAD CTGLQGFL+F + GG
Sbjct: 121 RVRKLADNCTGLQGFLVFNAVGG 143
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 274 bits (673), Expect = 2e-74
Identities = 118/143 (82%), Positives = 133/143 (93%)
Frame = +1
Query: 82 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 261
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSETGAGK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 262 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 441
HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYT+GKEIVDL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
Query: 442 RIRKLADQCTGLQGFLIFQSFGG 510
R+RKLAD CTGLQGFL+F + GG
Sbjct: 121 RVRKLADNCTGLQGFLVFNAVGG 143
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 263 bits (644), Expect = 5e-71
Identities = 111/143 (77%), Positives = 131/143 (91%)
Frame = +1
Query: 82 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 261
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSET +G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 262 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 441
HVPRAVF+DLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYT+G+EIVD L+
Sbjct: 61 HVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLE 120
Query: 442 RIRKLADQCTGLQGFLIFQSFGG 510
R+RKLAD CTGLQGFL+F + GG
Sbjct: 121 RLRKLADNCTGLQGFLVFNAVGG 143
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 143 bits (346), Expect = 7e-35
Identities = 66/146 (45%), Positives = 92/146 (63%), Gaps = 3/146 (2%)
Frame = +1
Query: 82 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGD---DSFNTFFSETG 252
MRE + + GQ G QIG+ WE+ C EHGI P G+ +G D + N +++E
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRY-----VGNSDLQLERVNVYYNEAS 55
Query: 253 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDL 432
G++VPRA+ +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D
Sbjct: 56 CGRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDA 115
Query: 433 VLDRIRKLADQCTGLQGFLIFQSFGG 510
VLD +RK A+ C LQGF + S GG
Sbjct: 116 VLDVVRKEAENCDCLQGFQVCHSLGG 141
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 141 bits (342), Expect = 2e-34
Identities = 64/143 (44%), Positives = 90/143 (62%)
Frame = +1
Query: 82 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 261
MRE + V GQ G QIG+ WE+ C EHG+ P G+ D + N +++E G+
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSA-DLQLERINVYYNEASGGR 59
Query: 262 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 441
+VPRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 60 YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 119
Query: 442 RIRKLADQCTGLQGFLIFQSFGG 510
+RK A+ C LQGF + S GG
Sbjct: 120 VVRKEAENCDCLQGFQVCHSLGG 142
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 140 bits (338), Expect = 7e-34
Identities = 64/143 (44%), Positives = 88/143 (61%)
Frame = +1
Query: 82 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 261
MRE + + GQ G QIG WE+ C EHGI P G+ D + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQL--ERINVYYNEASCGR 58
Query: 262 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 441
VPRAV +DLEP +D +R+G Y Q F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 59 FVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 118
Query: 442 RIRKLADQCTGLQGFLIFQSFGG 510
+RK A+ C LQGF + S GG
Sbjct: 119 VVRKEAENCDCLQGFQVCHSLGG 141
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 140 bits (338), Expect = 7e-34
Identities = 64/143 (44%), Positives = 88/143 (61%)
Frame = +1
Query: 82 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 261
MRE + + GQ G QIG WE+ C EHGI P G+ D + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQL--ERINVYYNEASCGR 58
Query: 262 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 441
VPRAV +DLEP +D +R+G Y Q F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 59 FVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 118
Query: 442 RIRKLADQCTGLQGFLIFQSFGG 510
+RK A+ C LQGF + S GG
Sbjct: 119 VVRKEAENCDCLQGFQVCHSLGG 141
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 139 bits (336), Expect = 1e-33
Identities = 65/143 (45%), Positives = 89/143 (62%)
Frame = +1
Query: 82 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 261
MRE + + GQ G QIG WE+ C EHGI GQ D + + N +F+E GK
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQL--ERINVYFNEASGGK 58
Query: 262 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 441
+VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 59 YVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 118
Query: 442 RIRKLADQCTGLQGFLIFQSFGG 510
+RK A+ C LQGF + S GG
Sbjct: 119 VVRKEAENCDCLQGFQVCHSLGG 141
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 138 bits (335), Expect = 2e-33
Identities = 63/143 (44%), Positives = 90/143 (62%)
Frame = +1
Query: 82 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 261
MRE + + GQ G QIG+ WE+ C EHGI G+ D T + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGD-TADLQLERINVYYNEASGGR 59
Query: 262 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 441
+VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 60 YVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 119
Query: 442 RIRKLADQCTGLQGFLIFQSFGG 510
+RK A+ C LQGF + S GG
Sbjct: 120 VVRKEAENCDCLQGFQVCHSLGG 142
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 138 bits (333), Expect = 3e-33
Identities = 64/143 (44%), Positives = 90/143 (62%)
Frame = +1
Query: 82 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 261
MRE + + GQ G QIG+ WE+ LEHGI G+ D + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQL--ERVNVYYNEASCGR 58
Query: 262 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 441
+VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 59 YVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 118
Query: 442 RIRKLADQCTGLQGFLIFQSFGG 510
+RK A+ C LQGF + S GG
Sbjct: 119 VVRKEAENCDCLQGFQVCHSLGG 141
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 137 bits (331), Expect = 5e-33
Identities = 63/143 (44%), Positives = 88/143 (61%)
Frame = +1
Query: 82 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 261
MRE + + GQ G QIG WE+ C EHGI G+ + + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQL--ERVNVYYNEASCGR 58
Query: 262 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 441
VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 59 FVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 118
Query: 442 RIRKLADQCTGLQGFLIFQSFGG 510
+RK A+ C LQGF + S GG
Sbjct: 119 VVRKEAENCDCLQGFQVCHSLGG 141
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 133 bits (322), Expect = 6e-32
Identities = 63/143 (44%), Positives = 88/143 (61%)
Frame = +1
Query: 82 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 261
MRE + + GQ G QIG WE+ C EHGI GQ D + + + +F+E GK
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQL--ERIDVYFNEASGGK 58
Query: 262 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 441
+VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 59 YVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 118
Query: 442 RIRKLADQCTGLQGFLIFQSFGG 510
+RK A+ LQGF + S GG
Sbjct: 119 VVRKEAENSDCLQGFQVCHSLGG 141
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 103 bits (247), Expect = 7e-23
Identities = 54/144 (37%), Positives = 82/144 (56%), Gaps = 2/144 (1%)
Frame = +1
Query: 85 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 264
RE I++ VGQ G QIG W+ CLEHGI DG + T GG D + FF + +
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDQHY 60
Query: 265 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDLVL 438
+PRA+ +DLEP V++ ++ G YR L++ E + A NN+A G++ GK + + ++
Sbjct: 61 IPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASGYHQ-GKGVEEEIM 119
Query: 439 DRIRKLADQCTGLQGFLIFQSFGG 510
D I + AD L+GF++ S G
Sbjct: 120 DMIDREADGSDSLEGFVLCHSIAG 143
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 103 bits (246), Expect = 9e-23
Identities = 54/144 (37%), Positives = 82/144 (56%), Gaps = 2/144 (1%)
Frame = +1
Query: 85 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 264
RE I++ VGQ G QIG W+ CLEHGI DG + T GG D + FF + +
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDQHY 60
Query: 265 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDLVL 438
+PRA+ +DLEP V++ ++ G YR L++ E + A NN+A G++ GK + + ++
Sbjct: 61 IPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASGYHQ-GKGVEEEIM 119
Query: 439 DRIRKLADQCTGLQGFLIFQSFGG 510
D I + AD L+GF++ S G
Sbjct: 120 DMIDREADGSDSLEGFVLCHSIAG 143
>At4g14510.1 68417.m02236 expressed protein contains Pfam domain,
PF04581: Protein of unknown function (DUF578)
Length = 932
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 160 EHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVD 309
E GIQ +G + ++ + G D +T F + A P FV+L+ +D
Sbjct: 881 EGGIQANGSL-SETDVEFGSDESDTDFGDNSASSTTPETTFVELQNEELD 929
>At2g17820.1 68415.m02064 histidine kinase 1 99% identical to
GP:4586626
Length = 1207
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -2
Query: 231 VEGVVSTPDGLVSWHLTIR--LDAVLKAIQLP 142
+ G+ PDG SWH+T+ +D+ L + LP
Sbjct: 272 IAGISQVPDGEASWHVTVSKYMDSPLLSAALP 303
>At1g75400.1 68414.m08759 expressed protein
Length = 455
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 197 TRPSGVETTPSTRSSARPELASTFPVPSSS 286
T P G TP+++ SA PE+++ VP SS
Sbjct: 83 TPPDGHLGTPASQKSATPEMSTNSMVPPSS 112
>At1g25510.1 68414.m03168 aspartyl protease family protein contains
Pfam domain, PF00026: eukaryotic aspartyl protease
Length = 483
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -2
Query: 360 DKLFWMKQLSVCASADLVNY--SGFKIDEDGTGNVLASSGLAEERVE 226
D +++ + +L+ S F++DE G+G ++ SG A R++
Sbjct: 326 DTFYYLGLTGISVGGELLQIPQSSFEMDESGSGGIIIDSGTAVTRLQ 372
>At3g29160.3 68416.m03654 Snf1-related protein kinase (KIN11)
identical to protein kinase AKin11 GI:1729444 from
[Arabidopsis thaliana]
Length = 359
Score = 27.9 bits (59), Expect = 4.2
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Frame = +1
Query: 148 LYCLEHGIQP--DGQMPT-DKTIGGGDDSFNTFFSETGAGKHVPRAVFVD-LEPTVVDEV 315
LY L G P D +P K I GG + + S A +PR + VD ++ + E+
Sbjct: 208 LYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSE-ARDLIPRMLIVDPVKRITIPEI 266
Query: 316 RTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 444
R + Q P L D + + I +E+V++ DR
Sbjct: 267 RQHRWFQTHLPRYLAVSPPDTVEQAKKINEEIVQEVVNMGFDR 309
>At3g29160.2 68416.m03653 Snf1-related protein kinase (KIN11)
identical to protein kinase AKin11 GI:1729444 from
[Arabidopsis thaliana]
Length = 512
Score = 27.9 bits (59), Expect = 4.2
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Frame = +1
Query: 148 LYCLEHGIQP--DGQMPT-DKTIGGGDDSFNTFFSETGAGKHVPRAVFVD-LEPTVVDEV 315
LY L G P D +P K I GG + + S A +PR + VD ++ + E+
Sbjct: 208 LYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSE-ARDLIPRMLIVDPVKRITIPEI 266
Query: 316 RTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 444
R + Q P L D + + I +E+V++ DR
Sbjct: 267 RQHRWFQTHLPRYLAVSPPDTVEQAKKINEEIVQEVVNMGFDR 309
>At3g29160.1 68416.m03652 Snf1-related protein kinase (KIN11)
identical to protein kinase AKin11 GI:1729444 from
[Arabidopsis thaliana]
Length = 512
Score = 27.9 bits (59), Expect = 4.2
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Frame = +1
Query: 148 LYCLEHGIQP--DGQMPT-DKTIGGGDDSFNTFFSETGAGKHVPRAVFVD-LEPTVVDEV 315
LY L G P D +P K I GG + + S A +PR + VD ++ + E+
Sbjct: 208 LYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSE-ARDLIPRMLIVDPVKRITIPEI 266
Query: 316 RTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 444
R + Q P L D + + I +E+V++ DR
Sbjct: 267 RQHRWFQTHLPRYLAVSPPDTVEQAKKINEEIVQEVVNMGFDR 309
>At5g04660.1 68418.m00474 cytochrome P450, putative cytochrome P450
77A3p, Glycine max., PIR:T05948
Length = 512
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 247 TGAGKHVPRAVFVDLE-PTVVDEVRTGTYRQLFHPEQLITGKEDA 378
T AG +P V V++ P + ++ R + F P++ + GKEDA
Sbjct: 392 TLAGYDIPAGVNVEVYLPGISEDPRIWNNPKKFDPDRFMLGKEDA 436
>At3g13330.1 68416.m01678 expressed protein
Length = 1711
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 59 KFKKLNTKCVSASLYTLAKPESRSEMPAGSCIALSTASNL 178
++ +L +KCV + L KP+ + + GSC LS+ S L
Sbjct: 938 RWPQLLSKCVLSLTENLRKPDVQEYVVLGSCAILSSHSVL 977
>At1g18260.1 68414.m02277 suppressor of lin-12-like protein-related
/ sel-1 protein-related similar to Sel-1 homolog
precursor (Suppressor of lin-12-like protein)
(Sel-1L)(SP:Q9UBV2) {Homo sapiens}
Length = 678
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 217 DDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPE 351
+D N+ + G G+ F + EP +E+ G++R +F P+
Sbjct: 34 NDDLNSGGDDNGVGESSDFDEFGESEPKSEEELDPGSWRSIFEPD 78
>At5g47020.1 68418.m05795 glycine-rich protein strong similarity to
unknown protein (emb|CAB87688.1)
Length = 1417
Score = 26.6 bits (56), Expect = 9.7
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 71 LNTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQ-LTRPSGVETTPSTRSSAR 247
++T C S S Y + + ES + + ST+S + V CQ L + TT + S+ R
Sbjct: 12 VSTPCFSLSQYGVTEFESSVRLFSDEASGNSTSSPISVTCQDLDGVGSLNTTCTLNSNLR 71
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 26.6 bits (56), Expect = 9.7
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 279 DGTGNVLASSGLAEERVEGVVSTPDGLVSWHLTIR 175
D GN+L S + E+R G S D LVS H I+
Sbjct: 1058 DPAGNMLFQSYMVEDRGSGGASYVDFLVSVHRQIQ 1092
>At3g11960.2 68416.m01476 cleavage and polyadenylation specificity
factor (CPSF) A subunit C-terminal domain-containing
protein similar to Splicing factor 3B subunit 3
(Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
(Pre-mRNA splicing factor SF3b 130kDa subunit)
(SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
A subunit region
Length = 1329
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -2
Query: 333 SVCASADLVNYSGFKIDEDGTGNV-LASS 250
S+C+S D +Y G K+DE T + LASS
Sbjct: 989 SLCSSPDDYSYDGIKLDEAETWQLRLASS 1017
>At3g11960.1 68416.m01475 cleavage and polyadenylation specificity
factor (CPSF) A subunit C-terminal domain-containing
protein similar to Splicing factor 3B subunit 3
(Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
(Pre-mRNA splicing factor SF3b 130kDa subunit)
(SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
A subunit region
Length = 1379
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -2
Query: 333 SVCASADLVNYSGFKIDEDGTGNV-LASS 250
S+C+S D +Y G K+DE T + LASS
Sbjct: 1047 SLCSSPDDYSYDGIKLDEAETWQLRLASS 1075
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,530,982
Number of Sequences: 28952
Number of extensions: 296292
Number of successful extensions: 1031
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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