Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K24
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    74   1e-14
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    66   3e-12
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    46   5e-06
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    29   0.56 
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    28   0.74 
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy...    28   0.98 
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    26   3.0  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    25   5.2  
SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr...    25   6.9  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    25   9.1  

>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 74.1 bits (174), Expect = 1e-14
 Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
 Frame = +3

Query: 177 TSPQDTKVKVQGSDGEFLNFCANNYLGLS-NHPEVVEAAREGLKKYGAGLSSVRFICGTQ 353
           ++  ++  K+ G     LN  + NYLG + +H        E ++KYG    S   ICGT 
Sbjct: 173 STDSNSTFKLTGDTSLALNVSSYNYLGFAQSHGPCATKVEEAMQKYGLSTCSSNAICGTY 232

Query: 354 TIHKELEHRLAQFHGREDAILYGSCFDANAGLFESMLTPEDAVFSDALNQASI 512
            +HKE+E   A F G+  A+++   F  NA +F +++ P   + SD LN  SI
Sbjct: 233 GLHKEVEELTANFVGKPAALVFSQGFSTNATVFSTLMCPGSLIISDELNHTSI 285


>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 66.1 bits (154), Expect = 3e-12
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
 Frame = +3

Query: 234 FCANNYLGLSNHPEVVEAAREGLKKYGAGLSSVRFICGTQTIHKELEHRLAQFHGREDAI 413
           +C+N+YL +  H ++ EA  + ++ YG G    R I G       LE  LA  H +  A+
Sbjct: 179 WCSNDYLNMGGHKKIREAMHQCIETYGGGAGGTRNIAGHNQHAVRLEKSLADLHQKPAAL 238

Query: 414 LYGSCFDANAGLFESM--LTPEDAVFSDALNQASIIDGI 524
           ++GSC+ AN     ++    P     SD +N AS+I+GI
Sbjct: 239 VFGSCYVANDATLSTLGRKLPNCIFLSDEMNHASMINGI 277


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 45.6 bits (103), Expect = 5e-06
 Identities = 29/98 (29%), Positives = 43/98 (43%)
 Frame = +3

Query: 231 NFCANNYLGLSNHPEVVEAAREGLKKYGAGLSSVRFICGTQTIHKELEHRLAQFHGREDA 410
           NF + N+L L+ +  + E A   L++ G G        GTQ  H  LE  +A F G E A
Sbjct: 131 NFASFNFLDLAENKHITECAVATLRECGLGACGPPGFYGTQDKHLRLEKDIASFIGVERA 190

Query: 411 ILYGSCFDANAGLFESMLTPEDAVFSDALNQASIIDGI 524
           I+Y   F   + +  +     D +  D     +I  GI
Sbjct: 191 IVYAQSFQTISSVIPAFSKRGDILVVDEACNFAIQKGI 228


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 96  VAKLREVLEDRLQEIKR-AKTWKHERVLTSPQDTKVKVQGSDGE 224
           + K  E+L+   + ++R  K W H RVLT   D + +V+ ++ E
Sbjct: 545 IEKAAELLDQPKEIVERHLKFWLHHRVLTDIGDDRYRVRETEAE 588


>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 28.3 bits (60), Expect = 0.74
 Identities = 27/107 (25%), Positives = 47/107 (43%)
 Frame = +3

Query: 117 LEDRLQEIKRAKTWKHERVLTSPQDTKVKVQGSDGEFLNFCANNYLGLSNHPEVVEAARE 296
           L +R+ E     T K    L +P+ T   +    G+      ++  G   +   +E AR+
Sbjct: 8   LLNRVNESAIVNTLKEYTGLNTPKWTFNDIPDLTGKVALVTGSS--GGIGYVTALELARK 65

Query: 297 GLKKYGAGLSSVRFICGTQTIHKELEHRLAQFHGREDAILYGSCFDA 437
           G K Y AG +  ++    + IH E+ H   +F  R D + + S + A
Sbjct: 66  GAKVYLAGRNEEKYQKVMKQIHDEVRHSKIRFL-RLDLLDFESVYQA 111


>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 27.9 bits (59), Expect = 0.98
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 108 REVLEDRLQEIKRAKTWKHERVLTSPQDTKVKVQGSDG 221
           REV+ED   ++++   W  E  L +  D  +K +G  G
Sbjct: 61  REVVEDVFAKVEQEHPWVKETKLVAKPDQLIKRRGKSG 98


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 511 IDAWLRASENTASSGVSIDSKRPALAS 431
           ID WLR+S+N   +   I S  PA+ +
Sbjct: 532 IDEWLRSSDNENMASEHIKSSTPAVVA 558


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 7/132 (5%)
 Frame = +3

Query: 111  EVLEDR---LQEIKRAKTWKHERVLTSPQDTKVKVQGSDGEFLNFCANNYLGLSNHPEVV 281
            +VLE R   +  + R   WK   V T  +   +       E L     +    +  P+++
Sbjct: 1019 DVLEQREYNMDGLDRDTEWKRVEVWTPDEGNAINGSAYTAEELKMKYRSQSQFTTTPDIL 1078

Query: 282  EAAREGLKKYGAGL----SSVRFICGTQTIHKELEHRLAQFHGREDAILYGSCFDANAGL 449
              A + +KK    +    SS+ F   TQ    E E    +     D I          G+
Sbjct: 1079 RKAEKSMKKLDQRVSLIPSSIEFNIKTQKDKVEFEKNYEKSKKGPDVIANALV----GGI 1134

Query: 450  FESMLTPEDAVF 485
              S+ T ED+++
Sbjct: 1135 PLSLKTKEDSLY 1146


>SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +3

Query: 138 IKRAKTWKHERVLTSPQDTKVKVQGSDGEFLNF 236
           ++RA+  ++E+V  S ++  + ++  DG FLN+
Sbjct: 29  LERAQFPRNEKVYKSGKEGCLNLENYDGSFLNY 61


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -1

Query: 147 LFLSPEGDLLKLPEALQLLHVPCFSTRVADVFDIVEYI 34
           L L+P G+LL+  +  + L   C     A++   +EY+
Sbjct: 132 LELAPNGELLQYIKKYRFLDENCVRFYAAEILSSIEYM 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,005,780
Number of Sequences: 5004
Number of extensions: 38405
Number of successful extensions: 125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)