Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K24
         (525 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   1.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.8  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 144 FLSPEGDLLKLPEALQLLHVPCFSTRVADV 55
           +LS E D+L++P +    + PC +   +D+
Sbjct: 210 YLSVEWDILEVPASRNEEYYPCCTEPYSDI 239


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 499  LRASENTASSGVSIDSKRP 443
            L A+  T SSG S D +RP
Sbjct: 1311 LIATNTTVSSGSSEDHRRP 1329


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 405 LHGRETGPNDALIPYELFESHK 340
           LH R+ GP D    Y+    H+
Sbjct: 165 LHIRDVGPEDGYKTYQCRTKHR 186



 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 346 GLKQFIRN*SIVWPSFTAVKMR 411
           GL+Q + N ++V+P F A   R
Sbjct: 50  GLRQVLPNGNLVFPPFRAEDYR 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,460
Number of Sequences: 438
Number of extensions: 2447
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)