Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_K24
(525 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g04620.2 68418.m00464 aminotransferase class I and II family ... 77 7e-15
At4g36480.1 68417.m05180 aminotransferase class I and II family ... 63 1e-10
At5g23670.1 68418.m02775 serine C-palmitoyltransferase (LCB2) id... 62 2e-10
At3g48780.1 68416.m05327 serine C-palmitoyltransferase, putative... 62 2e-10
At5g04620.1 68418.m00465 aminotransferase class I and II family ... 44 6e-05
At1g16960.1 68414.m02059 expressed protein 31 0.47
At5g57160.1 68418.m07140 DNA ligase IV identical to DNA ligase I... 28 3.3
At3g20350.1 68416.m02578 expressed protein 28 3.3
At1g50660.1 68414.m05696 expressed protein similar to liver stag... 28 3.3
At3g16430.2 68416.m02088 jacalin lectin family protein similar t... 28 4.4
At3g16430.1 68416.m02087 jacalin lectin family protein similar t... 28 4.4
At2g39310.1 68415.m04826 jacalin lectin family protein similar t... 27 5.8
At4g26000.1 68417.m03745 KH domain-containing protein single-str... 27 7.7
At2g20060.1 68415.m02344 ribosomal protein L4 family protein con... 27 7.7
>At5g04620.2 68418.m00464 aminotransferase class I and II family
protein similar to 8-amino-7-oxononanoate synthase,
Bacillus sphaericus, PIR:JQ0512 [SP|P22806], Bacillus
subtilis [SP|P53556]; contains Pfam protile PF00155
aminotransferase, classes I and II
Length = 476
Score = 77.0 bits (181), Expect = 7e-15
Identities = 48/120 (40%), Positives = 63/120 (52%), Gaps = 14/120 (11%)
Frame = +3
Query: 207 QGSDGEFLNFCANNYLGLSNHPEVVEAAREGLKKYGAGLSSVRFICGTQTIHKELEHRLA 386
+G + L F N+YLGLS+HP + AA +K+YG G ICG T H+ LE LA
Sbjct: 98 KGRFKKLLLFSGNDYLGLSSHPTISNAAANAVKEYGMGPKGSALICGYTTYHRLLESSLA 157
Query: 387 QFHGREDAILYGSCFDAN------AGLFESMLTPED--------AVFSDALNQASIIDGI 524
Q +ED ++ + F AN G S+L A+FSDALN ASIIDG+
Sbjct: 158 QLKKKEDCLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGV 217
>At4g36480.1 68417.m05180 aminotransferase class I and II family
protein similar to Serine palmitoyltransferase 1 (EC
2.3.1.50) from Homo sapiens [SP|O15269], Mus musculus
[SP|O35704], Cricetulus griseus [SP|O54695]
Length = 482
Score = 62.9 bits (146), Expect = 1e-10
Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Frame = +3
Query: 159 KHER-VLTSPQDTKVKVQGSDGEFLNFCANNYLGLSNHPEVVEAAREGLKKYGAGLSSVR 335
KHE VL S V G D +NF + NYLGL H +++E+ L+KYG G R
Sbjct: 90 KHEPPVLESAAGPHTTVNGKD--VVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPR 147
Query: 336 FICGTQTIHKELEHRLAQFHGREDAILY 419
GT +H + E R+++F G D+ILY
Sbjct: 148 GFYGTIDVHLDCETRISKFLGTPDSILY 175
>At5g23670.1 68418.m02775 serine C-palmitoyltransferase (LCB2)
identical to serine palmitoyltransferase [Arabidopsis
thaliana] GI:9309380; similar to serine
palmitoyltransferase from Solanum tuberosum
[GI:4995890], Homo sapiens [SP|O15270], Mus musculus
[SP|P97363]; contains Pfam profile PF00155:
aminotransferase, classes I and II
Length = 489
Score = 62.5 bits (145), Expect = 2e-10
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Frame = +3
Query: 228 LNFCANNYLGLSNHPEV-VEAAREGLKKYGAGLSSVRFICGTQTIHKELEHRLAQFHGRE 404
LN + NYLG + E E LKK+ A S R GT ++H ELE + +F G+
Sbjct: 103 LNLGSYNYLGFGSFDEYCTPRVIESLKKFSASTCSSRVDAGTTSVHAELEECVTRFVGKP 162
Query: 405 DAILYGSCFDANAGLFESMLTPEDAVFSDALNQASIIDG 521
A+++G + N+ + ++ + SD+LN +SI++G
Sbjct: 163 AAVVFGMGYATNSAIIPVLIGKGGLIISDSLNHSSIVNG 201
>At3g48780.1 68416.m05327 serine C-palmitoyltransferase, putative
similar to serine palmitoyltransferase from Solanum
tuberosum [GI:4995890], Homo sapiens [SP|O15270], Mus
musculus [SP|P97363]
Length = 489
Score = 62.1 bits (144), Expect = 2e-10
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Frame = +3
Query: 228 LNFCANNYLGLSNHPEV-VEAAREGLKKYGAGLSSVRFICGTQTIHKELEHRLAQFHGRE 404
LN + NYLG + E E LKK+ A S R GT ++H ELE +A++ G+
Sbjct: 103 LNLGSYNYLGFGSFDEYCTPRVIESLKKFSASTCSSRVDAGTTSVHAELEDCVAKYVGQP 162
Query: 405 DAILYGSCFDANAGLFESMLTPEDAVFSDALNQASIIDG 521
A+++G + N+ + ++ + SD+LN SI++G
Sbjct: 163 AAVIFGMGYATNSAIIPVLIGKGGLIISDSLNHTSIVNG 201
>At5g04620.1 68418.m00465 aminotransferase class I and II family
protein similar to 8-amino-7-oxononanoate synthase,
Bacillus sphaericus, PIR:JQ0512 [SP|P22806], Bacillus
subtilis [SP|P53556]; contains Pfam protile PF00155
aminotransferase, classes I and II
Length = 343
Score = 44.0 bits (99), Expect = 6e-05
Identities = 31/76 (40%), Positives = 39/76 (51%), Gaps = 14/76 (18%)
Frame = +3
Query: 339 ICGTQTIHKELEHRLAQFHGREDAILYGSCFDAN------AGLFESMLTPED-------- 476
ICG T H+ LE LAQ +ED ++ + F AN G S+L
Sbjct: 9 ICGYTTYHRLLESSLAQLKKKEDCLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKV 68
Query: 477 AVFSDALNQASIIDGI 524
A+FSDALN ASIIDG+
Sbjct: 69 AIFSDALNHASIIDGV 84
>At1g16960.1 68414.m02059 expressed protein
Length = 114
Score = 31.1 bits (67), Expect = 0.47
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +3
Query: 93 GVAKLREVLEDRLQEIKRAKTWKHERVLTSPQDTKVK 203
G + R + E + ++I+R KTWKH + ++ + T+++
Sbjct: 2 GCSSSRTIAEGKKEKIRRPKTWKHPQPISRDELTQMR 38
>At5g57160.1 68418.m07140 DNA ligase IV identical to DNA ligase IV
GI:9651815 from [Arabidopsis thaliana]; identical to
cDNA DNA ligase IV, GI:9651814
Length = 1219
Score = 28.3 bits (60), Expect = 3.3
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +3
Query: 216 DGEFL--NFCANNYLGLSNHPEVVEAAREGL---KKYGAGLSSVRFICGTQTIHKELEHR 380
DGE L + N + ++ E+ +AAREGL K+ V ++ T IH+ L+ R
Sbjct: 301 DGEMLVWDTSLNRFAEFGSNQEIAKAAREGLDSHKQLCYVAFDVLYVGDTSVIHQSLKER 360
>At3g20350.1 68416.m02578 expressed protein
Length = 673
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 105 LREVLEDRLQEIKRAKTWKHERVLTSPQDTKVKVQ 209
LRE ++D + ++ A+ W+ ERV D KV ++
Sbjct: 350 LREEVDDERRMLQMAEVWREERVQMKLIDAKVTLE 384
>At1g50660.1 68414.m05696 expressed protein similar to liver stage
antigen-1 (GI:510184) [Plasmodium falciparum]; similar
to Myosin II heavy chain, non muscle (Swiss-Prot:P08799)
[Dictyostelium discoideum]; similar to liver stage
antigen (GI:9916) [Plasmodium falciparum]; similar to
Kinesin-like protein KLPA (Swiss-Prot:P28739)
[Emericella nidulans]
Length = 725
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 105 LREVLEDRLQEIKRAKTWKHERVLTSPQDTKVKVQ 209
LRE ++D + ++ A+ W+ ERV D KV ++
Sbjct: 373 LREEVDDERRMLQMAEVWREERVQMKLIDAKVALE 407
>At3g16430.2 68416.m02088 jacalin lectin family protein similar to
myrosinase binding protein [Brassica napus] GI:1711296;
contains Pfam profile PF01419 jacalin-like lectin domain
Length = 296
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 345 GTQTIHKELEHRLAQFHGREDAILY 419
GT KE H++ FHGR DA+L+
Sbjct: 261 GTAFELKEEGHKIVGFHGRADALLH 285
>At3g16430.1 68416.m02087 jacalin lectin family protein similar to
myrosinase binding protein [Brassica napus] GI:1711296;
contains Pfam profile PF01419 jacalin-like lectin domain
Length = 296
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 345 GTQTIHKELEHRLAQFHGREDAILY 419
GT KE H++ FHGR DA+L+
Sbjct: 261 GTAFELKEEGHKIVGFHGRADALLH 285
>At2g39310.1 68415.m04826 jacalin lectin family protein similar to
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767; contains Pfam profile PF01419
jacalin-like lectin domain
Length = 458
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +3
Query: 345 GTQTIHKELEHRLAQFHGREDAILYGSCFDANAGLFESMLTPEDAVFSDAL 497
G + + ++ HRL FHG+EDA + DA F + TP + S L
Sbjct: 269 GKKFVLEQKGHRLVGFHGKEDAAI-----DALGAYFGPVPTPTPLIPSKKL 314
>At4g26000.1 68417.m03745 KH domain-containing protein
single-stranded nucleic acid-binding protein CBP -
mouse, PIR2:S78515
Length = 495
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 520 PSMIDAWLRASENTASSGVSIDSKRPALASKHDP 419
P ++ R SGVSI S+ P L+++H P
Sbjct: 295 PLFLERDSRVDSRVQPSGVSIYSQDPVLSARHSP 328
>At2g20060.1 68415.m02344 ribosomal protein L4 family protein
contains Pfam profile PF00573: ribosomal protein L4/L1
family
Length = 300
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 417 YGSCFDANAGLFESMLTPEDAVFSDALNQASII 515
YG +N L S+LTP+D+ SD L + +++
Sbjct: 45 YGMALLSNRKLSTSILTPDDSFPSDLLTKKTVL 77
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,512,624
Number of Sequences: 28952
Number of extensions: 203141
Number of successful extensions: 710
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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