Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_K23
(574 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 107 8e-24
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 87 1e-17
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 6e-11
SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014) 61 7e-10
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 57 1e-08
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 46 3e-05
SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0) 44 9e-05
SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 43 2e-04
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 42 4e-04
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 42 5e-04
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 42 5e-04
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13) 41 6e-04
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 40 0.001
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 40 0.001
SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44) 40 0.002
SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 38 0.008
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 37 0.010
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0) 37 0.013
SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.013
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0) 36 0.018
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 36 0.031
SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31) 35 0.041
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 34 0.095
SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.095
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 33 0.22
SB_9806| Best HMM Match : Mito_carr (HMM E-Value=0.061) 33 0.22
SB_34206| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.29
SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.38
SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.38
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.51
SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17) 31 0.88
SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14) 30 1.2
SB_30412| Best HMM Match : E-MAP-115 (HMM E-Value=2.8) 30 1.2
SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21) 30 1.5
SB_23920| Best HMM Match : Mito_carr (HMM E-Value=0.00039) 30 1.5
SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_3432| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-28) 28 4.7
SB_45532| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-40) 28 4.7
SB_18153| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=5) 28 6.2
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 107 bits (256), Expect = 8e-24
Identities = 53/93 (56%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
Frame = +2
Query: 257 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAEDQRYKGIVDAFVRIPKEQG 433
F ++F G +A +SKTA APIERVKLL+Q Q + K D YKG++D R + +G
Sbjct: 9 FVENFGLSGAAAIISKTAAAPIERVKLLVQNQDEMLKAGRLDHPYKGVIDCTSRTYRSEG 68
Query: 434 LLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 532
LSFWRGN AN IRYFPTQALNFAFKD+ K +F
Sbjct: 69 FLSFWRGNLANCIRYFPTQALNFAFKDQVKALF 101
Score = 37.1 bits (82), Expect = 0.010
Identities = 17/54 (31%), Positives = 33/54 (61%)
Frame = +2
Query: 374 EDQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFL 535
E +YKG +D ++I K++G +S +G AN++R + F DK+K++++
Sbjct: 245 EAVKYKGSIDCTIQILKKEGAMSLMKGAGANILRGMAGAGVLAGF-DKFKELYV 297
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 86.6 bits (205), Expect = 1e-17
Identities = 40/88 (45%), Positives = 64/88 (72%)
Frame = +2
Query: 263 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLS 442
K LAGGI+ AVS+T+V+P+ERVK+LLQ+Q ++ ++KG++ ++I KE+G+L
Sbjct: 36 KHLLAGGIAGAVSRTSVSPLERVKILLQIQ------VKNPKFKGVLPTLIQIGKEEGILG 89
Query: 443 FWRGNFANVIRYFPTQALNFAFKDKYKQ 526
+++GN NVIR FP A+ FA ++YK+
Sbjct: 90 YFKGNGTNVIRIFPYSAVQFAAYEEYKK 117
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 64.5 bits (150), Expect = 6e-11
Identities = 37/84 (44%), Positives = 51/84 (60%)
Frame = +2
Query: 278 GGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWRGN 457
GG A VS+TA AP++R+K+LLQVQ S R+ GIV F + +E G+ S WRGN
Sbjct: 143 GGALAGVSRTATAPLDRLKVLLQVQASSTN-----RF-GIVSGFKMMLREGGIKSLWRGN 196
Query: 458 FANVIRYFPTQALNFAFKDKYKQV 529
ANVI+ P + F +K K++
Sbjct: 197 GANVIKIAPESGIKFFAYEKAKKL 220
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/88 (26%), Positives = 48/88 (54%)
Frame = +2
Query: 272 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWR 451
LAG ++ S+T++ P+E +K L ++ + Y+G++ A I +++G+ SF+R
Sbjct: 235 LAGSMAGVASQTSIYPLEVLKTRLAIRKTGQ-------YRGLLHAASVIYQKEGIRSFYR 287
Query: 452 GNFANVIRYFPTQALNFAFKDKYKQVFL 535
G F +++ P ++ A + K +L
Sbjct: 288 GLFPSLLGIIPYAGIDLAVYETLKNFYL 315
>SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014)
Length = 76
Score = 60.9 bits (141), Expect = 7e-10
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Frame = +2
Query: 230 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAEDQRYKGIVDA 406
MS + F ++F G +A +SKTA APIERVKLL+Q Q + K YKG+VD
Sbjct: 1 MSGKKQNLHFVENFALSGAAAIISKTAAAPIERVKLLVQNQDEMLKAGRLSSPYKGVVDC 60
Query: 407 FVRIPKEQGLLSFWR 451
+R + +G+ SFWR
Sbjct: 61 TMRTYRAEGIGSFWR 75
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/85 (31%), Positives = 48/85 (56%)
Frame = +2
Query: 251 VAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQ 430
+ + + FL GG SA ++++ +P+E VK+L QV + G++ F + K +
Sbjct: 56 ITWFQSFLCGGTSAVLARSLTSPLEVVKVLAQV-------GTQEAKPGLIRTFASVYKRE 108
Query: 431 GLLSFWRGNFANVIRYFPTQALNFA 505
G+ +FW+GN + IR FP A+ +A
Sbjct: 109 GIKAFWKGNGVSCIRLFPYSAVQYA 133
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/71 (36%), Positives = 39/71 (54%)
Frame = +2
Query: 272 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWR 451
LAG S ++ V P E +K L VQHV+K A YKG+ A I +E+G+L+ ++
Sbjct: 157 LAGTSSTLIAMVTVYPCEVIKTRLTVQHVNKSNA---HYKGMRHALKTILREEGILALYK 213
Query: 452 GNFANVIRYFP 484
G + + FP
Sbjct: 214 GVTPSFLGLFP 224
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/76 (30%), Positives = 41/76 (53%)
Frame = +2
Query: 275 AGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWRG 454
AG ++ +AP++ VK+ LQ+Q +K+ Y+G VD V++ + +GL ++G
Sbjct: 39 AGSVAGLAQVPLIAPVDLVKIKLQMQTEAKRSTRSV-YRGPVDCLVKLYRSRGLAGCFQG 97
Query: 455 NFANVIRYFPTQALNF 502
N +R P A+ F
Sbjct: 98 NTVTAVRDIPGFAVYF 113
Score = 41.5 bits (93), Expect = 5e-04
Identities = 28/90 (31%), Positives = 45/90 (50%)
Frame = +2
Query: 233 SNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFV 412
SNL A +AGG + VS + P + +K +Q + RYKG++D +
Sbjct: 124 SNLFGSRGVATYLMAGGFAGVVSWASTFPFDVIKSRIQADGNLGKF----RYKGMMDCAL 179
Query: 413 RIPKEQGLLSFWRGNFANVIRYFPTQALNF 502
+ KE+G++ F RG + ++R F Q L F
Sbjct: 180 QSYKEEGMIVFTRGIWPTLLRGF-LQVLRF 208
>SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 309
Score = 44.0 bits (99), Expect = 9e-05
Identities = 26/104 (25%), Positives = 51/104 (49%)
Frame = +2
Query: 260 AKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLL 439
A++ +AG +S + A P++ +K+ LQ + K E +KG +D F++ + +GL
Sbjct: 21 ARNLIAGSVSGMLGCAAGQPLDLLKVRLQAMNQVKP-GETAPFKGAMDCFMKTVRLEGLR 79
Query: 440 SFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDQNTQFWRY 571
++G + ++ P+ AL F K++ L Q +Y
Sbjct: 80 GLYKGMLSPLLMATPSTALTFYSLSVGKRIQLSDPYQEPTLVQY 123
>SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +2
Query: 227 KMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ---HVSKQIAEDQRYKGI 397
K+ N P + G +S +SK + P + +K +QVQ + Q+Y G+
Sbjct: 19 KVHNPYKPADVIESLTCGALSGMISKAVILPFDIIKKRIQVQGFEEARQSFGRVQQYDGV 78
Query: 398 VDAFVRIPKEQGLLSFWRG 454
D F I KE+G + ++G
Sbjct: 79 KDCFRTILKEEGAMGLFKG 97
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Frame = +2
Query: 245 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIA---------EDQRYKGI 397
DP K F + GI+A++++ A PI+ K+ LQ+Q S +A D Y+G+
Sbjct: 11 DPSILVK-FCSAGIAASIAEAATIPIDTAKVRLQIQGESAVMASIAQGVRTTHDAHYRGM 69
Query: 398 VDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 532
+ V + K +G+ + ++G + R ++ D+ K ++
Sbjct: 70 LGTMVTLFKTEGMKTMYKGLIPGIHRQLCFASIRIGLYDQVKAMY 114
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/75 (29%), Positives = 35/75 (46%)
Frame = +2
Query: 269 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFW 448
F +GGI+ +S P++ VK Q + +Y G D +I G+ +F
Sbjct: 361 FFSGGIAGTLSWILTYPVDMVKSCYQADGRTNSGKPQYKYNGYADCVKKIYISGGVSAFG 420
Query: 449 RGNFANVIRYFPTQA 493
+G A ++R FPT A
Sbjct: 421 QGLLATILRGFPTNA 435
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Frame = +2
Query: 272 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIA----------EDQRYKGIVDAFVRIP 421
++G I+ V P+E K +QVQ +++ + Y G +D ++
Sbjct: 249 ISGAIAGGVQSIVCCPMELAKTRVQVQGQGQKLVHVFFLTNTETKQMAYTGSLDCLKKVF 308
Query: 422 KEQGLLSFWRGNFANVIRYFPTQALNF 502
+GL +RG R P AL F
Sbjct: 309 HSEGLRGCFRGMAITTTRDIPAFALYF 335
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/83 (26%), Positives = 40/83 (48%)
Frame = +2
Query: 284 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWRGNFA 463
I A TAV PI+ VK +Q Q + ++ YK +D F ++ + +G + +RG
Sbjct: 922 IKKATGATAVYPIDLVKTRMQNQRAV--LEAEKVYKNSIDCFFKVVRNEGPIGLYRGLLP 979
Query: 464 NVIRYFPTQALNFAFKDKYKQVF 532
++ P +A+ D + +F
Sbjct: 980 QLLGVSPEKAIKLTTNDFVRGIF 1002
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 41.5 bits (93), Expect = 5e-04
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Frame = +2
Query: 269 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGL-LSF 445
F+ GG++ AVS+T P++ V+ +Q ++ + + +Y ++ V + K+ G+
Sbjct: 176 FVCGGVAGAVSQTIAYPLDVVRRRMQ---LAGAVPDGHKYNTCINTLVNVYKDDGIRRGL 232
Query: 446 WRGNFANVIRYFPTQALNFAFKDKYKQ 526
+RG N +R P A+ F + KQ
Sbjct: 233 YRGLSINYLRVCPQVAIMFGVYEVTKQ 259
Score = 36.3 bits (80), Expect = 0.018
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = +2
Query: 395 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 529
++ AF I + +GLL++++GN A ++R FP A+ F + Y +V
Sbjct: 13 VLTAFRAIYRNEGLLAYFKGNGAMMLRTFPYGAVQFLSYEHYSKV 57
>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
Length = 577
Score = 41.1 bits (92), Expect = 6e-04
Identities = 23/61 (37%), Positives = 34/61 (55%)
Frame = +2
Query: 272 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWR 451
L G S ++ V P E +K L VQHV+K A YKG+ A I +E+G+L+ ++
Sbjct: 426 LVGTSSTLIAMVTVYPCEVIKTRLTVQHVNKSNAH---YKGMRHALKTILREEGILALYK 482
Query: 452 G 454
G
Sbjct: 483 G 483
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/55 (29%), Positives = 33/55 (60%)
Frame = +2
Query: 368 IAEDQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 532
I + ++Y G+++AF RI +++G+ +F+RG +I P ++F + K+ F
Sbjct: 19 ITQKKKYTGLINAFTRIYRDEGMRTFYRGYVPTLIGIMPYAGISFFTYETCKKAF 73
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 39.9 bits (89), Expect = 0.001
Identities = 14/48 (29%), Positives = 30/48 (62%)
Frame = +2
Query: 383 RYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQ 526
+Y G+ +I +++GL +++GN N++R P A+ FA +++K+
Sbjct: 590 KYSGVGGTLAKIYRDEGLYGYFKGNGTNIVRIVPYTAVQFAAYEEFKK 637
>SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)
Length = 192
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Frame = +2
Query: 269 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFW 448
F A IS + A P++ K +Q + I YKG +D RI + +G+ + W
Sbjct: 97 FGASMISGLATTVASMPVDIAKTRIQNMRI---IDGKPEYKGTMDVLARIVRNEGVFALW 153
Query: 449 RGNFANVIRYFPTQALNFAFKDKYKQV---FLGG 541
+G R P L F F ++ + F GG
Sbjct: 154 KGFTPYYFRIGPHTVLTFIFLEQLNRAANYFYGG 187
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 386 YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFL 535
Y + +A R+ KE+G+L+ WRG +R A A + KQ+ L
Sbjct: 35 YTNVFNALYRMSKEEGVLTLWRGYIPTAVRAMVVNAAQLATYSQAKQLLL 84
>SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 398 VDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDQNTQFW 565
+DA ++IP+ +GL S WRG ++ P + F D+ K + G + T W
Sbjct: 64 IDALIKIPRYEGLSSLWRGLPPTMVMAVPNTVIYFTLYDQLK-ISYGFKNNETNLW 118
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/81 (24%), Positives = 38/81 (46%)
Frame = +2
Query: 263 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLS 442
K+ +AG + A + P++ +K+ LQ + K E YK D F +I + +G+
Sbjct: 40 KNSIAGSAAGAAANLVGFPLDTIKVRLQAMPLPKP-GEPWMYKNSFDCFFKIIRNEGVYY 98
Query: 443 FWRGNFANVIRYFPTQALNFA 505
+RG ++ P + F+
Sbjct: 99 LFRGVTVPILNSIPNTTVLFS 119
Score = 35.5 bits (78), Expect = 0.031
Identities = 24/88 (27%), Positives = 40/88 (45%)
Frame = +2
Query: 221 SNKMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIV 400
S K+ DP + AG I+ + + P++RVK +LQ++ + Y G V
Sbjct: 126 SYKLPVSKDP-ELLRSLAAGMIAGVATSFVLTPLDRVKCILQIE----KAFGGSSYGGPV 180
Query: 401 DAFVRIPKEQGLLSFWRGNFANVIRYFP 484
D RI +E G+ ++G +R P
Sbjct: 181 DCLRRIYREAGVRGVYKGISVTAMRDIP 208
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +2
Query: 272 LAGGISAAVSKTAVA-PIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFW 448
+ G+S+ V +A+A P + VK+ Q + + I YK + AF +I K++G L W
Sbjct: 118 IVAGVSSGVIGSAIATPTDLVKIRFQAVKIGETIP----YKNMFHAFYKIAKKEGFLGLW 173
Query: 449 RG 454
G
Sbjct: 174 TG 175
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +2
Query: 272 LAGGISAAVSKTAVA-PIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFW 448
LA + A T VA P++ V+ Q + Y+G +D + + +G+L+ +
Sbjct: 215 LASALVAGFVATCVASPVDIVRTRFMTQPKDTK-GRPLVYQGTLDCIYKTVRHEGILALY 273
Query: 449 RGNFANVIR 475
+G F N R
Sbjct: 274 KGFFPNWTR 282
>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 203
Score = 36.7 bits (81), Expect = 0.013
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Frame = +2
Query: 272 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWR 451
LAG + A+ PIE +K LQ+ Y+G++ + KE+G+ +F+R
Sbjct: 2 LAGACATVFHDGAMNPIEVIKQRLQMY--------GSPYRGVIHCATSVFKEEGIRAFYR 53
Query: 452 GNFANVIRYFPTQALNFAFKDKYKQVF--LGGVDQNT 556
+ P Q L+F + ++ LGG D T
Sbjct: 54 SYTTQLSMNIPFQTLHFTVYEYARKALNPLGGYDPKT 90
>SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 36.7 bits (81), Expect = 0.013
Identities = 28/100 (28%), Positives = 43/100 (43%)
Frame = +2
Query: 263 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLS 442
K LAGGI+ + P E VK LQ+ + A Y+G +D + K G+L
Sbjct: 42 KAILAGGIAGGLEICCTFPTEYVKTQLQLD----EKAAKPIYRGPIDCVKKTVKGHGVLG 97
Query: 443 FWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDQNTQF 562
+RG + + P ++ FA + K + TQF
Sbjct: 98 LYRGLSSLLYGSVPKASVRFAVFEYLKNKMADENGKLTQF 137
>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 434
Score = 36.3 bits (80), Expect = 0.018
Identities = 20/72 (27%), Positives = 38/72 (52%)
Frame = +2
Query: 269 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFW 448
F++G + V+ + P++ V+ L VQ +S + + Y GIV A RI E+G+ +
Sbjct: 32 FVSGATAGVVATASTHPLDVVRARLTVQDMSTRSISN--YTGIVSALRRIHIEEGIRGLY 89
Query: 449 RGNFANVIRYFP 484
+G +++ P
Sbjct: 90 KGLVPSLVSIAP 101
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 35.5 bits (78), Expect = 0.031
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +2
Query: 314 APIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWRG 454
AP ERVK LLQVQ K+ RY+G+ D +++ + GL ++G
Sbjct: 179 APTERVKCLLQVQ---KESGTKARYQGLGDCLLQVYRTGGLRGVFKG 222
>SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31)
Length = 233
Score = 35.1 bits (77), Expect = 0.041
Identities = 22/81 (27%), Positives = 40/81 (49%)
Frame = +2
Query: 263 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLS 442
+ FLAGG ++ V +T P++ + L +Q Q + KG + G
Sbjct: 107 RGFLAGGCASIVGQTITVPVDIISQKLMIQ---GQGDRKVKLKGARILIRETFHQHGPGG 163
Query: 443 FWRGNFANVIRYFPTQALNFA 505
F++G FA+++ Y P+ A+ +A
Sbjct: 164 FYKGYFASLMTYAPSSAIWWA 184
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 33.9 bits (74), Expect = 0.095
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = +2
Query: 275 AGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWRG 454
AG ++ + AV P++ +K LQ+ + + + Y GI+D +I +GL +F++G
Sbjct: 211 AGCLAGMTASVAVNPLDVIKTRLQLLNRPQG---EPNYNGIIDCAKKIYSNEGLAAFYKG 267
Query: 455 NFANVIRYFP 484
+I P
Sbjct: 268 AVPRMIVIAP 277
>SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 33.9 bits (74), Expect = 0.095
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 416 IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 529
+P+E L W G F++VI F A+N AF+++YK++
Sbjct: 272 LPREVYLFYSWIGAFSSVINPFIYGAMNPAFREEYKKI 309
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 32.7 bits (71), Expect = 0.22
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = +2
Query: 317 PIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 496
PI+ K +QVQ + Q +Y+ + A I + G+ ++G A ++R P
Sbjct: 221 PIDLFKSKMQVQIIRAQSGAPIQYRNVFHAGYTIAQTYGIRGCYQGLSATLVRNIPANGF 280
Query: 497 NFAFKDKYKQV 529
F F + K +
Sbjct: 281 FFGFYEFTKNL 291
>SB_9806| Best HMM Match : Mito_carr (HMM E-Value=0.061)
Length = 114
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +2
Query: 281 GISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWR 451
G+S +KT AP+ER+K+L Q Q+ + + + A I K++GL +++
Sbjct: 63 GLSTCCAKTTTAPLERLKILFQAQN------KHYKNMSVFGALKAIYKKEGLQGYYK 113
>SB_34206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +2
Query: 416 IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 529
+P+E +L W G ++VI F A+N F+D+YK++
Sbjct: 139 LPREVYVLYTWLGTLSSVINPFIYGAMNPVFRDEYKKL 176
>SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 313
Score = 31.9 bits (69), Expect = 0.38
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = +2
Query: 263 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLS 442
K+F AGG P++ +K+ LQ K E + G D ++ + +G
Sbjct: 28 KNFFAGGFGGVCCIATGHPLDTIKVRLQTMPRPKP-GEKPMFTGTFDCAMKTIRNEGFFG 86
Query: 443 FWRGNFANVIRYFPTQALNF 502
++G A + P A+ F
Sbjct: 87 LYKGMAAPITGVTPIFAICF 106
>SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 31.9 bits (69), Expect = 0.38
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +2
Query: 275 AGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYK-GIVDAFVRIPKEQGLLSFWR 451
AG +A + P E +K LQ QH + I+ K G++D ++I + G +R
Sbjct: 112 AGSGAAFFMSFVLCPAELIKCRLQAQHQTNLISGMAGPKSGVIDVTMQIIRNDGFQGLFR 171
Query: 452 GNFANVIRYFP 484
G A R P
Sbjct: 172 GMTATWAREVP 182
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 31.5 bits (68), Expect = 0.51
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = +2
Query: 272 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWR 451
LA GIS ++ + P E + L+ Q + Q+Y+ + +E+G +
Sbjct: 936 LAAGISKCIATSLCYPHEVARTRLRQQE--SEFLGRQKYRSFFQTLGTVLREEGWRGLYG 993
Query: 452 GNFANVIRYFPTQALNF 502
G +VIR P A+ F
Sbjct: 994 GLGTHVIRQVPNTAIMF 1010
>SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17)
Length = 187
Score = 30.7 bits (66), Expect = 0.88
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +2
Query: 263 KDFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAEDQRYKGIVDAFVRIPKEQGLL 439
K+F+ G +A+ + P+E VK +Q+Q + + Y+ + A I K +G+L
Sbjct: 6 KEFVLGATAASGACFFTNPLEVVKTRMQLQGELKSRGTYSVYYRNVFHASYTIAKYEGIL 65
Query: 440 SFWRGNFANVI 472
+ +G F +I
Sbjct: 66 AMQKGLFPALI 76
>SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14)
Length = 553
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 299 SKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWRGN 457
S+ VA ER +L+ Q Q D RY+G +D+F + +G L +RG+
Sbjct: 278 SRQTVACPERCGVLMASQGKRGQYMSDARYRGHLDSFRGDARYRGHLDSFRGD 330
>SB_30412| Best HMM Match : E-MAP-115 (HMM E-Value=2.8)
Length = 492
Score = 30.3 bits (65), Expect = 1.2
Identities = 24/83 (28%), Positives = 35/83 (42%)
Frame = +1
Query: 277 WRYLRRRLQDSRSAHRARQIAAPSPARQQTDRRGPTLQGYRRRLRPHSQGAGSALILAW* 456
W+ ++ LQ HR + A+Q+ R LQG R R G GSAL +
Sbjct: 263 WKERQKELQGKGGRHRGNGEGSVVNAQQEWKERQKELQGKGGRHR--GNGEGSALNVQQE 320
Query: 457 LRQCHQVLPDSGAQLRFQGQVQA 525
R+ + L G + R G+ A
Sbjct: 321 WRERQKELQGKGGRHRGNGEGSA 343
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = +1
Query: 277 WRYLRRRLQDSRSAHRARQIAAPSPARQQTDRRGPTLQGYRRRLRPHSQGAGSALILAW* 456
WR ++ LQ HR + A+Q+ R LQG R R +G GSA+ +
Sbjct: 379 WRERQKELQGKGGRHRGNGEGSAVNAQQEWRERQKELQGKGGRHR--GKGEGSAVNVQQE 436
Query: 457 LRQCHQVLPDSGAQLRFQGQ 516
R+ + L G + R G+
Sbjct: 437 WRERQKELQGKGGRHRGNGE 456
Score = 28.7 bits (61), Expect = 3.6
Identities = 21/83 (25%), Positives = 35/83 (42%)
Frame = +1
Query: 277 WRYLRRRLQDSRSAHRARQIAAPSPARQQTDRRGPTLQGYRRRLRPHSQGAGSALILAW* 456
W+ ++ LQ HR + A+Q+ R LQG R R + +G+ W
Sbjct: 350 WKERQKELQGKGGRHRGNGEGSVVNAQQEWRERQKELQGKGGRHRGNGEGSAVNAQQEW- 408
Query: 457 LRQCHQVLPDSGAQLRFQGQVQA 525
R+ + L G + R +G+ A
Sbjct: 409 -RERQKELQGKGGRHRGKGEGSA 430
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/80 (26%), Positives = 33/80 (41%)
Frame = +1
Query: 277 WRYLRRRLQDSRSAHRARQIAAPSPARQQTDRRGPTLQGYRRRLRPHSQGAGSALILAW* 456
W+ ++ LQ HR + A+Q+ R LQG R R + +G+ W
Sbjct: 205 WKERQKELQGKGGRHRGNGEGSVVNAQQEWKERQKELQGKGGRHRGNGEGSAVNAQQEWK 264
Query: 457 LRQCHQVLPDSGAQLRFQGQ 516
RQ + L G + R G+
Sbjct: 265 ERQ--KELQGKGGRHRGNGE 282
Score = 27.5 bits (58), Expect = 8.2
Identities = 22/83 (26%), Positives = 34/83 (40%)
Frame = +1
Query: 277 WRYLRRRLQDSRSAHRARQIAAPSPARQQTDRRGPTLQGYRRRLRPHSQGAGSALILAW* 456
W+ ++ LQ HR + A+Q+ R LQG R R + +G+ W
Sbjct: 234 WKERQKELQGKGGRHRGNGEGSAVNAQQEWKERQKELQGKGGRHRGNGEGSVVNAQQEWK 293
Query: 457 LRQCHQVLPDSGAQLRFQGQVQA 525
RQ + L G + R G+ A
Sbjct: 294 ERQ--KELQGKGGRHRGNGEGSA 314
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/83 (25%), Positives = 33/83 (39%)
Frame = +1
Query: 277 WRYLRRRLQDSRSAHRARQIAAPSPARQQTDRRGPTLQGYRRRLRPHSQGAGSALILAW* 456
WR ++ LQ HR + +Q+ R LQG R R + +G+ W
Sbjct: 321 WRERQKELQGKGGRHRGNGEGSAVNVQQEWKERQKELQGKGGRHRGNGEGSVVNAQQEW- 379
Query: 457 LRQCHQVLPDSGAQLRFQGQVQA 525
R+ + L G + R G+ A
Sbjct: 380 -RERQKELQGKGGRHRGNGEGSA 401
>SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21)
Length = 198
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 275 AGGISAAVSKTAVAPIERVKLLLQ 346
AGG++ S+T AP+E++K++ Q
Sbjct: 175 AGGVAGVASRTLTAPLEKMKIIAQ 198
>SB_23920| Best HMM Match : Mito_carr (HMM E-Value=0.00039)
Length = 54
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 392 GIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 529
G+V + G +RGN A ++R P ++ F ++YK++
Sbjct: 1 GVVHVLTQTYTTNGFTGLFRGNSATMMRVVPYASIQFTSHEQYKKL 46
>SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 866
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 419 PKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFL 535
P+E L W G ++VI F +N F++++K+++L
Sbjct: 815 PRELYLFYSWLGALSSVINPFIYGVMNPMFREEFKRIYL 853
>SB_3432| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-28)
Length = 343
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 416 IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 532
+P+E L + G ++VI F A+N F+++YK+VF
Sbjct: 263 LPRELYFLYTYVGVLSSVINPFIYGAMNPMFREEYKKVF 301
>SB_45532| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-40)
Length = 368
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +2
Query: 416 IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 529
+P+E +L + G ++VI F A+N FK++YK++
Sbjct: 267 LPREVYVLYSFLGGLSSVINPFIYGAMNPIFKEQYKKI 304
>SB_18153| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=5)
Length = 237
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/104 (19%), Positives = 47/104 (45%)
Frame = +2
Query: 221 SNKMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIV 400
S + ++A V+ + + + +K+A +K+L + + Q+ + + + +
Sbjct: 15 SESIKDVAKQVSNLSNKVTSEFKSVKNKSASTAETILKILGDLGEIKDQLLKTE--ETVA 72
Query: 401 DAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 532
D+ R K G+ + R N ++ ++Y PT N + K +F
Sbjct: 73 DS-TRYKKSGGIAVYIRENISSGVKYIPTDNENVLWVKVCKNIF 115
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 289 RRRLQDSRSAHRARQIAAPSPARQQTDRRGPTLQGYRRRLRPHS 420
RR +D R + +R+ +PSP +++ RR P+ RR R S
Sbjct: 1076 RRTPEDRRRSRGSRR--SPSPPKREPRRRSPSASPPRREARKRS 1117
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,053,771
Number of Sequences: 59808
Number of extensions: 413384
Number of successful extensions: 1350
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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