Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_K22
(347 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53890.1 68416.m05953 40S ribosomal protein S21 (RPS21B) ribo... 79 1e-15
At5g27700.1 68418.m03322 40S ribosomal protein S21 (RPS21C) ribo... 77 3e-15
At2g12505.1 68415.m01352 hypothetical protein 31 0.16
At5g14350.1 68418.m01677 plastocyanin-like domain-containing pro... 30 0.37
At2g35960.1 68415.m04414 harpin-induced family protein / HIN1 fa... 29 0.64
At5g24740.1 68418.m02920 expressed protein 29 0.85
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 29 0.85
At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi... 29 1.1
At3g04890.1 68416.m00531 expressed protein 28 2.0
At4g17110.1 68417.m02577 expressed protein ; expression supporte... 27 2.6
At1g68020.2 68414.m07771 glycosyl transferase family 20 protein ... 27 2.6
At1g68020.1 68414.m07770 glycosyl transferase family 20 protein ... 27 2.6
At3g63180.1 68416.m07097 expressed protein 27 4.5
At3g18390.1 68416.m02339 expressed protein contains Pfam domain,... 27 4.5
At2g35110.1 68415.m04307 HEM protein-related weak similarity to ... 27 4.5
At5g35450.1 68418.m04215 disease resistance protein (CC-NBS-LRR ... 26 7.9
At5g25520.2 68418.m03037 transcription elongation factor-related... 26 7.9
At5g25520.1 68418.m03036 transcription elongation factor-related... 26 7.9
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 26 7.9
At1g31850.3 68414.m03915 dehydration-responsive protein, putativ... 26 7.9
At1g31850.2 68414.m03914 dehydration-responsive protein, putativ... 26 7.9
At1g31850.1 68414.m03913 dehydration-responsive protein, putativ... 26 7.9
At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR... 26 7.9
At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR... 26 7.9
>At3g53890.1 68416.m05953 40S ribosomal protein S21 (RPS21B)
ribosomal protein S21, cytosolic - Oryza sativa,
PIR:S38357
Length = 82
Score = 78.6 bits (185), Expect = 1e-15
Identities = 38/81 (46%), Positives = 53/81 (65%)
Frame = +1
Query: 40 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADSSKMYVVCGAIR 219
M+NDAG+ +LY PRKCSA+NR+I +KDHASVQL I +D A G + +CG +R
Sbjct: 1 MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLD-ANGLYTGQFTTFALCGFVR 59
Query: 220 RMGESDDCIVRLTKKDGILAK 282
G++D + RL +K + AK
Sbjct: 60 AQGDADSGVDRLWQKKKVEAK 80
>At5g27700.1 68418.m03322 40S ribosomal protein S21 (RPS21C)
ribosomal protein S21, Zea mays, PIR:T03945
Length = 85
Score = 77.0 bits (181), Expect = 3e-15
Identities = 38/81 (46%), Positives = 52/81 (64%)
Frame = +1
Query: 40 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADSSKMYVVCGAIR 219
MQN+ G+ +LY PRKCSA+NRLI +KDHASVQL I +D A G + +CG +R
Sbjct: 1 MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLD-ANGLYTGQFTTFALCGFVR 59
Query: 220 RMGESDDCIVRLTKKDGILAK 282
G++D + RL +K + AK
Sbjct: 60 AQGDADSGVDRLWQKKKVEAK 80
>At2g12505.1 68415.m01352 hypothetical protein
Length = 344
Score = 31.5 bits (68), Expect = 0.16
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = -3
Query: 294 TSVVLSQYPVFLSEPDYAVVGLSHPAN---GSTDHVHL 190
T + LS + LS+P Y +GLSHP G +D +HL
Sbjct: 143 TFLDLSHPTIVLSDPFYQTIGLSHPTRPTIGLSDPIHL 180
>At5g14350.1 68418.m01677 plastocyanin-like domain-containing
protein similar to NtEPc [Nicotiana tabacum] GI:4514716;
contains Pfam profile PF02298: Plastocyanin-like domain
Length = 490
Score = 30.3 bits (65), Expect = 0.37
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -3
Query: 267 VFLSEPDYAVVGLSHPANGSTDHVHLG-GVSSTSGCRVHVRYHELH 133
+FL EP+ +++G S +T+H+ LG VS+ V V ++E H
Sbjct: 24 LFLCEPNRSLLGSSVGVGWNTEHLELGKEVSTEDSSSVSVDHYESH 69
>At2g35960.1 68415.m04414 harpin-induced family protein / HIN1
family protein / harpin-responsive family protein
similar to harpin-induced protein hin1 ( GI:1619321)
[Nicotiana tabacum]
Length = 210
Score = 29.5 bits (63), Expect = 0.64
Identities = 23/74 (31%), Positives = 31/74 (41%)
Frame = -3
Query: 231 LSHPANGSTDHVHLGGVSSTSGCRVHVRYHELHRCVVLRMDQTITRRAFPWAVQVNEFTS 52
LS P N T + + S R+ + Y LH R Q R A P Q ++ +
Sbjct: 62 LSQP-NLLTSNFQITIASRNRNSRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDN 120
Query: 51 VVLHFVYLSSTQIA 10
V FVY +S IA
Sbjct: 121 VWSPFVYGNSVPIA 134
>At5g24740.1 68418.m02920 expressed protein
Length = 3306
Score = 29.1 bits (62), Expect = 0.85
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -2
Query: 187 RSQQHVRLQGPRPLSRAAPMR 125
RSQ+H RL+ PRPLSR P+R
Sbjct: 3114 RSQRH-RLRLPRPLSREQPLR 3133
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 29.1 bits (62), Expect = 0.85
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -1
Query: 206 QTTYILEESAARPVAGSTSAITSCTD 129
Q T ILEE+ +P+ STSAIT T+
Sbjct: 496 QITNILEENVVQPLLVSTSAITLATE 521
>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 682
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +1
Query: 142 VIADVDPATGRAADSSKMYVVCGA-----IRRMGESDDCIVRLTKKD 267
VI+++D A ADSS V C A + ++ +SD CI + + D
Sbjct: 339 VISEIDAAIANGADSSPQLVACKAEAFLRLHQIKDSDLCISSIPRLD 385
>At3g04890.1 68416.m00531 expressed protein
Length = 216
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +1
Query: 94 ASNRLIHAKDHASVQLVIADVDPATG-RAADSSKMYVVCGAIRRMGESDDCI 246
+S + KD + ++ DVD G +D Y V G + SDDCI
Sbjct: 57 SSTSIATNKDRSKNEVTAGDVDDVMGILRSDYRNFYFVTGVLTSAIYSDDCI 108
>At4g17110.1 68417.m02577 expressed protein ; expression supported
by MPSS
Length = 335
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 90 AFPWAVQVNEFTSVVLHFVYLSSTQ 16
++PWA Q+ + S LHF+ L T+
Sbjct: 283 SYPWACQIYQVRSDALHFMALRQTK 307
>At1g68020.2 68414.m07771 glycosyl transferase family 20 protein /
trehalose-phosphatase family protein similar to
SP|Q00764 Alpha,alpha-trehalose-phosphate synthase
[UDP-forming] 56 kDa subunit (EC 2.4.1.15)
(Trehalose-6-phosphate synthase) {Saccharomyces
cerevisiae}; contains Pfam profile: PF02358
trehalose-phosphatase
Length = 860
Score = 27.5 bits (58), Expect = 2.6
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -1
Query: 164 AGSTSAITSCTDAWSFAW 111
+GS+S+ T C+ W+F+W
Sbjct: 75 SGSSSSSTCCSKGWNFSW 92
>At1g68020.1 68414.m07770 glycosyl transferase family 20 protein /
trehalose-phosphatase family protein similar to
SP|Q00764 Alpha,alpha-trehalose-phosphate synthase
[UDP-forming] 56 kDa subunit (EC 2.4.1.15)
(Trehalose-6-phosphate synthase) {Saccharomyces
cerevisiae}; contains Pfam profile: PF02358
trehalose-phosphatase
Length = 700
Score = 27.5 bits (58), Expect = 2.6
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -1
Query: 164 AGSTSAITSCTDAWSFAW 111
+GS+S+ T C+ W+F+W
Sbjct: 75 SGSSSSSTCCSKGWNFSW 92
>At3g63180.1 68416.m07097 expressed protein
Length = 978
Score = 26.6 bits (56), Expect = 4.5
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -2
Query: 232 TLPSCEWLHRPRTSWRSQQHVRLQGPRPLSRAAPMR-GPSHGSDDYSPSISLGSTSQRIH 56
+L SC L+ + ++SQQ +R G +S AAP PS G S S T H
Sbjct: 860 SLTSCTSLNLKQ--FQSQQQIRTHGQTQISFAAPTNPQPSQGKQGRSGGSSPSVTGSASH 917
>At3g18390.1 68416.m02339 expressed protein contains Pfam domain,
PF04581: Protein of unknown function (DUF578)
Length = 848
Score = 26.6 bits (56), Expect = 4.5
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = +1
Query: 4 RGRDLCGA*IHKMQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIAD 153
RG D G + Q AG L+ P SA + +AKD+ S LVI D
Sbjct: 326 RGLDYKGPPVISNQM-AGPKETLFVPDVSSAGDEATNAKDNQSAPLVIKD 374
>At2g35110.1 68415.m04307 HEM protein-related weak similarity to
Membrane-associated protein Hem (Dhem-2)
(Swiss-Prot:P55162) [Drosophila melanogaster]; weak
similarity to Nck-associated protein 1 (NAP 1) (p125Nap1)
(Membrane-associated protein HEM-2) (Swiss-Prot:P55161)
[Rattus norvegicus]
Length = 1339
Score = 26.6 bits (56), Expect = 4.5
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = -2
Query: 208 HRPRTSWRS--QQHVRLQGPRPLSRAAPMRGPSHGSDDYSPSISLGSTSQR 62
H P T RS Q+ PLS A+P PS SPS+ +T QR
Sbjct: 1193 HVPYTILRSIYTQYYSNTPSTPLSTASPYHSPSVSLIHASPSMKNSTTPQR 1243
>At5g35450.1 68418.m04215 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 901
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 189 GGVSSTSGCRVHVRYHELHRCVVLRMDQTI 100
G + S+ G +H+R+ LH+ VV + TI
Sbjct: 583 GKLPSSIGGLIHLRFLSLHQAVVSHLPSTI 612
>At5g25520.2 68418.m03037 transcription elongation factor-related
contains weak similarity to transcription elongation
factors
Length = 997
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = +1
Query: 37 KMQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADSSKMYVVCGAI 216
K ND E + +A+ L+H + + + ++ + A+ ADS++ CG
Sbjct: 201 KTLNDGNESLRSKMKESLAAALALVHEHEESPKEKKNSETEEASVPVADSNEPASACGTS 260
Query: 217 RRMGE 231
+GE
Sbjct: 261 VTVGE 265
>At5g25520.1 68418.m03036 transcription elongation factor-related
contains weak similarity to transcription elongation
factors
Length = 735
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = +1
Query: 37 KMQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADSSKMYVVCGAI 216
K ND E + +A+ L+H + + + ++ + A+ ADS++ CG
Sbjct: 201 KTLNDGNESLRSKMKESLAAALALVHEHEESPKEKKNSETEEASVPVADSNEPASACGTS 260
Query: 217 RRMGE 231
+GE
Sbjct: 261 VTVGE 265
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 112 HAKDHASVQLVIADVDPATGRAADSS 189
HAK+ A+V ++A +DP TG+ S
Sbjct: 587 HAKEAATVVKLVAMLDPKTGQPTKKS 612
>At1g31850.3 68414.m03915 dehydration-responsive protein, putative
strong similarity to early-responsive to dehydration
stress ERD3 protein [Arabidopsis thaliana] GI:15320410;
contains Pfam profile PF03141: Putative
methyltransferase
Length = 603
Score = 25.8 bits (54), Expect = 7.9
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 185 PPRCTWSVEPFAGWESP 235
PP+C S+EP + W +P
Sbjct: 367 PPKCDDSIEPDSAWYTP 383
>At1g31850.2 68414.m03914 dehydration-responsive protein, putative
strong similarity to early-responsive to dehydration
stress ERD3 protein [Arabidopsis thaliana] GI:15320410;
contains Pfam profile PF03141: Putative
methyltransferase
Length = 603
Score = 25.8 bits (54), Expect = 7.9
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 185 PPRCTWSVEPFAGWESP 235
PP+C S+EP + W +P
Sbjct: 367 PPKCDDSIEPDSAWYTP 383
>At1g31850.1 68414.m03913 dehydration-responsive protein, putative
strong similarity to early-responsive to dehydration
stress ERD3 protein [Arabidopsis thaliana] GI:15320410;
contains Pfam profile PF03141: Putative
methyltransferase
Length = 603
Score = 25.8 bits (54), Expect = 7.9
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 185 PPRCTWSVEPFAGWESP 235
PP+C S+EP + W +P
Sbjct: 367 PPKCDDSIEPDSAWYTP 383
>At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1556
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 207 TDHVHLGGVSSTSGCRVHV-RYHELHRCVVLRMD 109
T+ +HL GV T+ ++H+ RY H V + D
Sbjct: 1450 TNTLHLSGVPRTNNDQLHICRYSAFHPLVTMLKD 1483
>At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1544
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 207 TDHVHLGGVSSTSGCRVHV-RYHELHRCVVLRMD 109
T+ +HL GV T+ ++H+ RY H V + D
Sbjct: 1436 TNTLHLSGVPRTNNDQLHICRYSAFHPLVTMLKD 1469
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,673,974
Number of Sequences: 28952
Number of extensions: 149696
Number of successful extensions: 547
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -