Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K21
         (485 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q231B3 Cluster: ATPase, histidine kinase-, DNA gyrase B...    33   2.6  
UniRef50_A4BFV7 Cluster: Diguanylate cyclase/phosphodiesterase (...    32   6.0  

>UniRef50_Q231B3 Cluster: ATPase, histidine kinase-, DNA gyrase B-,
           and HSP90-like domain containing protein; n=1;
           Tetrahymena thermophila SB210|Rep: ATPase, histidine
           kinase-, DNA gyrase B-, and HSP90-like domain containing
           protein - Tetrahymena thermophila SB210
          Length = 781

 Score = 33.5 bits (73), Expect = 2.6
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +3

Query: 36  SIASTKCTHFRYLQLFWLQLAVMLVSVTST 125
           +I S K  +F+Y Q FW+ LA++LVS+  T
Sbjct: 20  TIYSEKINNFQYKQTFWVLLAILLVSLIQT 49


>UniRef50_A4BFV7 Cluster: Diguanylate cyclase/phosphodiesterase
           (GGDEF & EAL domains) with PAS/PAC sensor; n=1; Reinekea
           sp. MED297|Rep: Diguanylate cyclase/phosphodiesterase
           (GGDEF & EAL domains) with PAS/PAC sensor - Reinekea sp.
           MED297
          Length = 814

 Score = 32.3 bits (70), Expect = 6.0
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +3

Query: 156 RINSVKTQAFTDQASHRAATEVLRALTSKDSL 251
           +INSV   AF+DQ   R A E+ +AL  +DSL
Sbjct: 432 QINSVHGDAFSDQLLRRIAGELTKALREEDSL 463


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 425,076,928
Number of Sequences: 1657284
Number of extensions: 7196424
Number of successful extensions: 17394
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17385
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 28130105105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)