Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K21
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   1.1  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    27   1.5  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    26   2.6  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    26   3.5  
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    25   4.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   4.6  

>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 267 MYPLCEDCPLKLKPVE-LPWLLDERLDP 187
           +YP C+DC L    ++ LP ++ E +DP
Sbjct: 145 LYPFCKDCSLVFMGLQLLPSMVREGIDP 172


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 172 KLRPSRIKPLIEQPRKFYGL 231
           K+R  R KPLIE+P + YG+
Sbjct: 74  KVRRDRGKPLIEEPEENYGI 93


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 248 SSQSGYIGTTVSPTSSTGFISQTTLSGT 331
           SS S    +T S TSS+  +S TTL+ +
Sbjct: 112 SSSSSAASSTTSTTSSSSLVSSTTLTSS 139


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = -1

Query: 161  DTTVLRTMYEEPCTGNRDQHHR*LQPKQLQISKVCTFC*RDANAPDESRLQP 6
            +++ L  ++ +P    +    + ++PK   +S+   F  +  N P E+RL P
Sbjct: 1628 ESSKLSLIHNKPPIYQKVSEQQNVRPKSSGVSRPLLFLQQQKNLPSENRLHP 1679


>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = -2

Query: 166 ELIRRYSVRCMRNLVLVTETNITASCSQNSCKYRKCVHFVDAMLTLQMNLVYSL 5
           E I+ ++V  +RNL   +E N  A    N+ +  +C+  +DA +++Q  +   L
Sbjct: 348 EEIQCHAVSTLRNLAASSERNKRAIIEANAIQKLRCL-ILDAPVSVQSEMTACL 400


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -2

Query: 388 VIKTAYSTAA*LSVSD---LVTGST*SSLTYKASTRCWANSCSYVST 257
           V  T  ST+  +S SD   ++  S  S++T  ASTR    + S +ST
Sbjct: 408 VTTTIVSTSTLISASDSTSIIVSSYVSTVTQPASTRVQTTTVSSIST 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,793,492
Number of Sequences: 5004
Number of extensions: 30959
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)