Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K21
         (485 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12390| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)                  27   8.2  

>SB_12390| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 868

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -1

Query: 191 IREGLSFHRIDTTVLRTMYEEP 126
           ++ G+S++R+ TT L  ++E+P
Sbjct: 93  LKSGISYNRVSTTYLNQLHEQP 114


>SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)
          Length = 425

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 33  VSIASTKCTHFR-YLQLFWLQLAVMLVSVTSTRFLIHRT 146
           V++A  +C H   Y+ L  L  A +LVSV S  + IH+T
Sbjct: 55  VTVACYRCLHSATYILLVSLATADLLVSVFSMPWRIHQT 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,298,123
Number of Sequences: 59808
Number of extensions: 227574
Number of successful extensions: 589
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)