Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K21
         (485 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48360.1 68418.m05975 formin homology 2 domain-containing pro...    28   3.8  
At2g25590.1 68415.m03065 agenet domain-containing protein contai...    27   5.1  
At5g11070.1 68418.m01293 expressed protein                             27   6.7  
At4g20130.1 68417.m02945 ribulose-1,5 bisphosphate carboxylase/o...    27   8.9  
At3g03405.1 68416.m00338 hypothetical protein temporary automate...    27   8.9  
At2g15750.1 68415.m01803 hypothetical protein                          27   8.9  
At1g55540.1 68414.m06356 proline-rich family protein contains pr...    27   8.9  

>At5g48360.1 68418.m05975 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 782

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 162 NSVKTQAFTDQASHRAATEVLRALTSKDSLHKVDT 266
           N VK Q+F+DQ   +   E LR+ +SK S   V+T
Sbjct: 417 NDVKKQSFSDQPPKQLHWERLRSSSSKLSKEMVET 451


>At2g25590.1 68415.m03065 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 381

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 112 ETNITASCSQNSCKYRKCVHFVDAMLTLQMNL 17
           E  + ASC++N   +R+ V  V  ++ + +NL
Sbjct: 197 ELYVKASCNENKSGFRQMVRMVPTLVVVMLNL 228


>At5g11070.1 68418.m01293 expressed protein
          Length = 152

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 112 ETNITASCSQNSCKYRKCVH 53
           ++ I  +C  N+C Y  CVH
Sbjct: 73  KSRIKVTCRNNNCAYNNCVH 92


>At4g20130.1 68417.m02945 ribulose-1,5 bisphosphate
           carboxylase/oxygenase large subunit
           N-methyltransferase-related contains weak similarity to
           Swiss-Prot:P94026 ribulose-1,5 bisphosphate
           carboxylase/oxygenase large subunit N-
           methyltransferase, chloroplast precursor (Ribulose-
           bisphosphate-carboxylase]-lysine N-methyltransferase,
           RuBisCO methyltransferase, RuBisco LSMT, rbcMT)
           [Nicotiana tabacum]
          Length = 483

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +3

Query: 18  RFIWSVSIASTKC 56
           RFIW+VS+A T+C
Sbjct: 249 RFIWAVSMAQTRC 261


>At3g03405.1 68416.m00338 hypothetical protein temporary automated
           functional assignment
          Length = 193

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 295 TRCWANSCSYVSTL*RLSFEVKARR 221
           T CW  +CSYV +L +L      +R
Sbjct: 151 TNCWTQACSYVPSLVQLKQPAGGKR 175


>At2g15750.1 68415.m01803 hypothetical protein 
          Length = 280

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 261 PLCEDCPLKLKPVELPWLLDERLDP*RPEFSPN 163
           P  E C L L P  L   L+E LDP  P  +P+
Sbjct: 34  PEYEKCILSLHPSYLALKLEEDLDPFGPRVAPD 66


>At1g55540.1 68414.m06356 proline-rich family protein contains
           proline rich extensin domain, INTERPRO:IPR002965
          Length = 915

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +2

Query: 269 GTTVSPTSSTGFISQTTLSGT 331
           GTTV+P SS+GF+S  + SGT
Sbjct: 563 GTTVTPVSSSGFLSGFS-SGT 582


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,219,938
Number of Sequences: 28952
Number of extensions: 158973
Number of successful extensions: 371
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)