Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_K20
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 227 1e-60
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 225 4e-60
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 29 0.56
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.0
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 4.0
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 4.0
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 5.2
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 6.9
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 25 9.1
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 227 bits (555), Expect = 1e-60
Identities = 105/193 (54%), Positives = 143/193 (74%)
Frame = +1
Query: 58 IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 237
+VDPF+RKDWYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D
Sbjct: 20 VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDE-- 77
Query: 238 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 417
E SFRK +L ED+QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN +KTTDGY+ R+
Sbjct: 78 EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRI 137
Query: 418 FCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDI 597
F IGFT++ +KT YAQ +Q+RAI +KM ++I ++E+V KLIP+ I + I
Sbjct: 138 FVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAI 197
Query: 598 EKACHGIYPLRDV 636
EKA + IYPL++V
Sbjct: 198 EKATNNIYPLQNV 210
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 225 bits (550), Expect = 4e-60
Identities = 104/193 (53%), Positives = 145/193 (75%)
Frame = +1
Query: 58 IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 237
+VDPF+RK+WYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D
Sbjct: 20 VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDE-- 77
Query: 238 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 417
E +FRK +L ED+QG++ L +F+G+ +T+DKLR +V+KWQT IEA+ +KTTDGY+ RV
Sbjct: 78 EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRV 137
Query: 418 FCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDI 597
F IGFT + +KT YAQ +Q+RAIR+KM ++I +S +RE+V KLIP+ I ++I
Sbjct: 138 FVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREI 197
Query: 598 EKACHGIYPLRDV 636
E+A I+PL++V
Sbjct: 198 ERATGSIFPLQNV 210
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 29.1 bits (62), Expect = 0.56
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 193 VFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTL 366
VF+V + + D R+ + +A Q R V C H MDL + LR +V ++ L
Sbjct: 86 VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143
Query: 367 IEANIDVKTT 396
+E + D++TT
Sbjct: 144 LETSKDLETT 153
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 4.0
Identities = 33/126 (26%), Positives = 46/126 (36%)
Frame = +2
Query: 248 SASSDLSLRMSRDVMFSAISTAWTSPLINSDGW*RNGRHXXXXXXXXXXXXDMSYVFSAS 427
S+SS S S S+ S++ +SP S + MS S S
Sbjct: 275 SSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTI-SSSSSSSSSFSSTLSSSSMSSSSSFS 333
Query: 428 VSPTRIRSANARHATLSIPKSAQSGKKCVKSSRAM*PVQSFVKS*TS*FLTPSLRISKRR 607
SPT S + ++ S S KSS + S S +S LT S S R
Sbjct: 334 SSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRP 393
Query: 608 VTVSTH 625
+ S+H
Sbjct: 394 ASSSSH 399
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -3
Query: 179 PSDAIFVPWVRLTRVVPTCLLVNMDGALTSYQSLRVKGSTIFF 51
PSD+ F W +L R+V + + + LT YQ + K +FF
Sbjct: 1905 PSDSTFPLWAKLPRLVISEDVQGISQPLTVYQFI-CKAPDLFF 1946
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 418 FCIGFTNKDTLSQRKTCY 471
FC G NKDT+ K C+
Sbjct: 475 FCDGIVNKDTVMTSKACF 492
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +1
Query: 295 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTC 468
L + + + +T +++++ + N + K YV ++ G NK+T S RKTC
Sbjct: 1685 LLSTYMVGFSTSIIQYIIHLILLEFDFNGNNKKQKEYVTQLILSGLLNKNTNSIRKTC 1742
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 316 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 414
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = +1
Query: 337 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTCYA 474
++ W L+ T GYV+R GFT+ + + K +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,719
Number of Sequences: 5004
Number of extensions: 54484
Number of successful extensions: 147
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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