Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K20
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)         140   1e-33
SB_8542| Best HMM Match : PT (HMM E-Value=4)                           30   1.8  
SB_7154| Best HMM Match : bZIP_1 (HMM E-Value=2)                       29   4.2  
SB_50272| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)               28   7.3  
SB_51205| Best HMM Match : RVT_1 (HMM E-Value=1.7e-21)                 28   7.3  
SB_23740| Best HMM Match : PAN (HMM E-Value=0.0056)                    28   7.3  
SB_55670| Best HMM Match : zf-C2H2 (HMM E-Value=1.6e-29)               28   7.3  
SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)              28   7.3  
SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_48859| Best HMM Match : TBC (HMM E-Value=7.1e-12)                   27   9.7  
SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_9937| Best HMM Match : Fer2 (HMM E-Value=6.9)                       27   9.7  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score =  140 bits (338), Expect = 1e-33
 Identities = 63/92 (68%), Positives = 79/92 (85%)
 Frame = +1

Query: 361 TLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTS 540
           TLIEA +DVKTTDGY+LR+FCIGFT +     +KT YA+HTQ++AIRKKM +IITR+V++
Sbjct: 2   TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVST 61

Query: 541 SELREVVNKLIPDSIAKDIEKACHGIYPLRDV 636
           ++L+EVVNKLIPDSI KDIEK+C  IYPL DV
Sbjct: 62  NDLKEVVNKLIPDSIGKDIEKSCQSIYPLHDV 93


>SB_8542| Best HMM Match : PT (HMM E-Value=4)
          Length = 650

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 307 GNCREHYVP-GHPQR*V*TCGKTFPHHYQPGDQQGRPQKHAPLDPQMQF 164
           GN +  Y P G+PQ      G   P +Y PG+ Q  P+ + P +PQ ++
Sbjct: 370 GNPQSRYYPSGNPQPRYYPSGNPQPRYYLPGNPQ--PRYYLPGNPQPRY 416



 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -1

Query: 307 GNCREHYVP-GHPQR*V*TCGKTFPHHYQPGDQQGRPQKHAPLDPQMQFLFPG 152
           GN +  Y P G+PQ     CG   P +Y  G+ Q  P+ +   +PQ  FL  G
Sbjct: 189 GNPQPKYYPSGNPQSRYYPCGNPQPKYYPSGNPQ--PRYYPSGNPQPWFLPSG 239


>SB_7154| Best HMM Match : bZIP_1 (HMM E-Value=2)
          Length = 287

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +3

Query: 411 TCFLHRFHQQGYAQPTQDMLRSAYPSPRNQEK-NV*NHHARCDQFRAS*SREQADS*LHR 587
           TC   +F + G   P  +  R   P PR  EK  V     R ++F A  SR++    ++R
Sbjct: 214 TCIKTKFEEMGIQLPKVEYKRPPTPQPRPPEKPEVVEQRRRQNKFAAMKSRKKRTERINR 273


>SB_50272| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 430 FTNKDTLSQRKTCYAQH-TQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIE 600
           FT+K  + + + C+ +  +   +  K    ++T+    S +REV+ K +PD     IE
Sbjct: 38  FTSKALVQRVRPCFQEFLSSALSSEKLFVAVVTQSPQVSLVREVLEKALPDCDTTKIE 95


>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
          Length = 1249

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -2

Query: 345 HPSEFISGEVHAVEIAENITSLDILSDKSELAERP 241
           +PSE I    HAVE AE +  L  LS+ S  ++ P
Sbjct: 15  NPSEGIKITTHAVEQAEQLERLHRLSESSAASQVP 49


>SB_51205| Best HMM Match : RVT_1 (HMM E-Value=1.7e-21)
          Length = 387

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -3

Query: 125 CLLV-NMDGALTSYQSLRVKGSTIFFLTPF-LPPRAEFLQHRG 3
           C+L  N DGA T Y+++R++ ST+  L P  L  R   L H G
Sbjct: 329 CILTENWDGAPTQYKAVRLELSTLAKLIPTKLRKRVLELGHEG 371


>SB_23740| Best HMM Match : PAN (HMM E-Value=0.0056)
          Length = 265

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 197 LRSPLLISRLIVMRKGLSASSDLSLRMSRDVMF 295
           LR P+L++ LI + +GL+  SD S  + RD  F
Sbjct: 3   LRYPVLLAVLISLARGLALESDNSNTIQRDDYF 35


>SB_55670| Best HMM Match : zf-C2H2 (HMM E-Value=1.6e-29)
          Length = 637

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 53  FLTPFLPPRAEFLQHRG 3
           F +PF PPR E++QH G
Sbjct: 379 FTSPFGPPRYEYMQHPG 395


>SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)
          Length = 531

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = -2

Query: 621 VDTVTRLFDILSDGVRNQLVHDFTKL*TG-HIARDDFTHFFPDCADLGMLS-VACLALAE 448
           +DTV+ LFDIL+ GV + ++H  +K       A ++ TH  P  A++      AC A  E
Sbjct: 441 MDTVSSLFDILTFGVFSNVLHATSKQDMEISSATEEKTHSVP--AEIRARGREACEAFQE 498

Query: 447 RILVGET 427
            +  G+T
Sbjct: 499 ALENGQT 505


>SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 58  IVDPFTRKDWYDVKAPSMFTKRQ 126
           +V+P+  KDW D    SMF+ RQ
Sbjct: 98  LVEPWRWKDWEDFTQSSMFSGRQ 120


>SB_48859| Best HMM Match : TBC (HMM E-Value=7.1e-12)
          Length = 660

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 363 CLPFLYHPSEFISGEVHAVEIAENITSLDILSDKSE 256
           C+P L   S+ + GE+ AV    ++ S D+L DK++
Sbjct: 30  CVPLLREDSDAVDGELSAV---SDVESSDLLYDKAD 62


>SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 144 DKGGAHLSLGEHGRRFNIVPVFTGER 67
           D+      +G HG  F IVP++T E+
Sbjct: 89  DRTFQRADVGPHGEAFKIVPIYTDEK 114


>SB_9937| Best HMM Match : Fer2 (HMM E-Value=6.9)
          Length = 229

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 319 LTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 423
           L T +   +  +WQT +  N+ VK TDG +    C
Sbjct: 142 LPTCQTTMLFSEWQTKLVCNLTVKKTDGKMQMYTC 176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,159,690
Number of Sequences: 59808
Number of extensions: 465737
Number of successful extensions: 1056
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)