Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K20
         (637 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal pr...   308   3e-84
AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA, i...   308   3e-84
Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal prot...   293   2e-79
AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p pro...   269   2e-72
AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB, i...   237   7e-63
AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD, i...   161   1e-39
AE013599-2921|AAF57537.1|  632|Drosophila melanogaster CG15904-P...    30   2.3  

>AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal
           protein S3a protein.
          Length = 268

 Score =  308 bits (757), Expect = 3e-84
 Identities = 145/193 (75%), Positives = 165/193 (85%)
 Frame = +1

Query: 58  IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 237
           +VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D 
Sbjct: 21  VVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDP 80

Query: 238 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 417
           ERSFRKFRLIAEDVQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRV
Sbjct: 81  ERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRV 140

Query: 418 FCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDI 597
           FCIGFT KD  SQRKTCYAQ +QVR IR +M +IIT +V+ ++L+++VNKL  DSIAKDI
Sbjct: 141 FCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDI 200

Query: 598 EKACHGIYPLRDV 636
           EK+C  IYPL DV
Sbjct: 201 EKSCQRIYPLHDV 213


>AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA,
           isoform A protein.
          Length = 268

 Score =  308 bits (757), Expect = 3e-84
 Identities = 145/193 (75%), Positives = 165/193 (85%)
 Frame = +1

Query: 58  IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 237
           +VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D 
Sbjct: 21  VVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDP 80

Query: 238 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 417
           ERSFRKFRLIAEDVQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRV
Sbjct: 81  ERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRV 140

Query: 418 FCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDI 597
           FCIGFT KD  SQRKTCYAQ +QVR IR +M +IIT +V+ ++L+++VNKL  DSIAKDI
Sbjct: 141 FCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDI 200

Query: 598 EKACHGIYPLRDV 636
           EK+C  IYPL DV
Sbjct: 201 EKSCQRIYPLHDV 213


>Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal protein
           S3a protein.
          Length = 270

 Score =  293 bits (718), Expect = 2e-79
 Identities = 141/195 (72%), Positives = 161/195 (82%), Gaps = 2/195 (1%)
 Frame = +1

Query: 58  IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLA-DLQADSD 234
           +VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+  KGRVFEVSL  DLQ D D
Sbjct: 21  VVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYFKGRVFEVSLVPDLQKDID 80

Query: 235 AERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLR 414
            E SFRKFRLIAEDVQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LR
Sbjct: 81  PEHSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLR 140

Query: 415 VFCIGFTNKDTLSQRKTCYAQHTQVRAIRK-KMCEIITRDVTSSELREVVNKLIPDSIAK 591
           VFCIGFT KD  SQRKTCYA  +QVR IR  +M +IIT +V+ ++L+++VNKL  DSIAK
Sbjct: 141 VFCIGFTAKDQQSQRKTCYAHESQVRKIRSGRMTDIITNEVSGADLKQLVNKLALDSIAK 200

Query: 592 DIEKACHGIYPLRDV 636
           DIEK+C  IYPL DV
Sbjct: 201 DIEKSCQRIYPLHDV 215


>AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p
           protein.
          Length = 217

 Score =  269 bits (660), Expect = 2e-72
 Identities = 125/168 (74%), Positives = 145/168 (86%)
 Frame = +1

Query: 58  IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 237
           +VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D 
Sbjct: 21  VVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDP 80

Query: 238 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 417
           ERSFRKFRLIAEDVQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRV
Sbjct: 81  ERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRV 140

Query: 418 FCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVV 561
           FCIGFT KD  SQRKTCYAQ +QVR IR +M +IIT +V+ ++L++++
Sbjct: 141 FCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLL 188


>AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB,
           isoform B protein.
          Length = 218

 Score =  237 bits (581), Expect = 7e-63
 Identities = 113/150 (75%), Positives = 127/150 (84%)
 Frame = +1

Query: 187 GRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 366
           GRVFEVSLADLQ D D ERSFRKFRLIAEDVQ RNVLCNFHGMDLTTDK R MVKKWQTL
Sbjct: 14  GRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTL 73

Query: 367 IEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSE 546
           IEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR IR +M +IIT +V+ ++
Sbjct: 74  IEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGAD 133

Query: 547 LREVVNKLIPDSIAKDIEKACHGIYPLRDV 636
           L+++VNKL  DSIAKDIEK+C  IYPL DV
Sbjct: 134 LKQLVNKLALDSIAKDIEKSCQRIYPLHDV 163


>AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD,
           isoform D protein.
          Length = 163

 Score =  161 bits (390), Expect = 1e-39
 Identities = 75/108 (69%), Positives = 89/108 (82%)
 Frame = +1

Query: 313 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVR 492
           MDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR
Sbjct: 1   MDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVR 60

Query: 493 AIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIEKACHGIYPLRDV 636
            IR +M +IIT +V+ ++L+++VNKL  DSIAKDIEK+C  IYPL DV
Sbjct: 61  KIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDV 108


>AE013599-2921|AAF57537.1|  632|Drosophila melanogaster CG15904-PA
           protein.
          Length = 632

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 612 VTRLFDILSDGVRNQLVHDFTKL*TGHIARDDFTHFFPDC 493
           +T L D++S GV   L+H FT++ T  +    +     DC
Sbjct: 275 MTNLLDLVSQGVYETLIHSFTEITTKFVVSYSYPIGINDC 314


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,974,226
Number of Sequences: 53049
Number of extensions: 664493
Number of successful extensions: 1741
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1739
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2662347150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)