Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_K20
(637 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z32681-6|CAA83605.1| 257|Caenorhabditis elegans Hypothetical pr... 259 1e-69
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical... 30 1.2
U50191-6|AAK31554.2| 235|Caenorhabditis elegans Hypothetical pr... 29 3.7
AF016415-8|AAW88415.1| 297|Caenorhabditis elegans Serpentine re... 29 3.7
Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical pr... 27 8.5
Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical pr... 27 8.5
Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical pr... 27 8.5
Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical pr... 27 8.5
AC024756-2|AAK29884.1| 413|Caenorhabditis elegans Hypothetical ... 27 8.5
>Z32681-6|CAA83605.1| 257|Caenorhabditis elegans Hypothetical
protein F56F3.5 protein.
Length = 257
Score = 259 bits (634), Expect = 1e-69
Identities = 124/192 (64%), Positives = 150/192 (78%)
Frame = +1
Query: 61 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 240
VDPF+RK+WYD+KAP+MF RQVG TL+NRTQGTKIASEGLKGRVFEVSL DL +++E
Sbjct: 20 VDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL---NNSE 76
Query: 241 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 420
FRKF+LIAEDVQG+NVL NFH M +T DKL +VKKW TLIEAN VKTTDGY LRVF
Sbjct: 77 ADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVF 136
Query: 421 CIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIE 600
I FT K +KT Y + +++R IR +M I ++VT +L+EVV+KLIPDSI KDIE
Sbjct: 137 VIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIE 196
Query: 601 KACHGIYPLRDV 636
K C +YPL++V
Sbjct: 197 KTCSKLYPLQEV 208
>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
protein Y66D12A.14 protein.
Length = 2870
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -3
Query: 203 TSKTRPFRPSDAIFVPWVRLTRVVPTCLLVNMDGA 99
TSK +P R D I V R T CL V GA
Sbjct: 2175 TSKAQPIRSDDVISVAGTRSTETTMKCLAVQFTGA 2209
>U50191-6|AAK31554.2| 235|Caenorhabditis elegans Hypothetical
protein T14B4.8 protein.
Length = 235
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -3
Query: 170 AIFVPWVRLTRVVPTCLLVNMDGALTSYQSLRVKG 66
+ F+P++R R VPT +++ +G + Y +L G
Sbjct: 119 SFFIPFLRPRRTVPTFSIIDWNGEVLGYYALASDG 153
>AF016415-8|AAW88415.1| 297|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 32 protein.
Length = 297
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 395 VVLTSMLASISVCHFFTIHLSLSVVRSMPWKLQRTLRPWTSSAISL 258
V + ++ ++ V H F+ H L V +PW T R + AISL
Sbjct: 60 VYIIFVILTMEVPHLFSNHRGLIVTLGLPWSNFATCRSAIALAISL 105
>Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical
protein C38C10.5b protein.
Length = 1374
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 101 RRPCSPRDKWAPPLSIAPREQKL 169
R P ++ + PP I PREQKL
Sbjct: 86 RMPSKIKEAFIPPAKITPREQKL 108
>Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical
protein C38C10.5a protein.
Length = 1368
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 101 RRPCSPRDKWAPPLSIAPREQKL 169
R P ++ + PP I PREQKL
Sbjct: 86 RMPSKIKEAFIPPAKITPREQKL 108
>Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical
protein C38C10.5b protein.
Length = 1374
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 101 RRPCSPRDKWAPPLSIAPREQKL 169
R P ++ + PP I PREQKL
Sbjct: 86 RMPSKIKEAFIPPAKITPREQKL 108
>Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical
protein C38C10.5a protein.
Length = 1368
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 101 RRPCSPRDKWAPPLSIAPREQKL 169
R P ++ + PP I PREQKL
Sbjct: 86 RMPSKIKEAFIPPAKITPREQKL 108
>AC024756-2|AAK29884.1| 413|Caenorhabditis elegans Hypothetical
protein Y34D9A.1 protein.
Length = 413
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 321 EVHAVEIAENITSLDILSDKSELAE 247
E+H +E AE++ SL +L KSE+ +
Sbjct: 63 EMHIIEPAEHMKSLKVLMQKSEIEQ 87
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,166,965
Number of Sequences: 27780
Number of extensions: 330140
Number of successful extensions: 891
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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