Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K20
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...   271   2e-73
At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)           269   1e-72
At4g13060.1 68417.m02037 F-box family protein-related contains T...    30   1.5  
At3g53130.1 68416.m05855 cytochrome P450 family protein similar ...    29   2.6  
At4g13320.1 68417.m02082 expressed protein                             27   7.9  
At1g63020.1 68414.m07117 DNA-directed RNA polymerase alpha subun...    27   7.9  

>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score =  271 bits (665), Expect = 2e-73
 Identities = 127/192 (66%), Positives = 157/192 (81%)
 Frame = +1

Query: 61  VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 240
           VDPF++KDWYDVKAPS+FT R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D  
Sbjct: 21  VDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDED-- 78

Query: 241 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 420
            ++RK RL AEDVQGRNVLC F GMD TTDKLR +VKKWQTLIEA++DVKTTD Y LR+F
Sbjct: 79  NAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLF 138

Query: 421 CIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIE 600
           CI FT +     ++TCYAQ +Q+R IR+KM +I+ R+ +S +L+++V K IP++I ++IE
Sbjct: 139 CIAFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIE 198

Query: 601 KACHGIYPLRDV 636
           KA  GIYPL++V
Sbjct: 199 KATQGIYPLQNV 210


>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score =  269 bits (659), Expect = 1e-72
 Identities = 127/192 (66%), Positives = 155/192 (80%)
 Frame = +1

Query: 61  VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 240
           VDPF++KDWYDVKAP  FT R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D  
Sbjct: 21  VDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78

Query: 241 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 420
            ++RK RL AEDVQGRNVL  F GMD TTDKLR +VKKWQTLIEA++DVKTTDGY LR+F
Sbjct: 79  NAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMF 138

Query: 421 CIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIE 600
           CI FT +     ++TCYAQ +Q+R IR+KM EI+ ++ +S +L+E+V K IP++I ++IE
Sbjct: 139 CIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIE 198

Query: 601 KACHGIYPLRDV 636
           KA  GIYPL++V
Sbjct: 199 KATQGIYPLQNV 210


>At4g13060.1 68417.m02037 F-box family protein-related contains
           TIGRFAM TIGR01640: F-box protein interaction domain
          Length = 335

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -2

Query: 249 ERPFRITISLEISKGDLKNTPL*TLRCNFCSLGAIDKGGAHLSLGEHGRRFNIVPVFTGE 70
           ++P  +T+  + S   +KN+P       +  +  +    A++S  EH R  N VP FT E
Sbjct: 110 QKPHILTLGSQESWRVIKNSPDHKPTSRYYCINGVVYYNAYISSEEHRRGHNTVPAFTKE 169


>At3g53130.1 68416.m05855 cytochrome P450 family protein similar to
           Cytochrome P450 97B2 (SP:048921) [Glycine max]
          Length = 539

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 31/119 (26%), Positives = 48/119 (40%)
 Frame = +1

Query: 235 AERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLR 414
           AER   K +  AED    N+   F  M L    L        +L   N D  TTD  V+ 
Sbjct: 193 AERLVEKLQPYAEDGSAVNMEAKFSQMTLDVIGL--------SLFNYNFDSLTTDSPVIE 244

Query: 415 VFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAK 591
                +T       R T    + ++ A+    C+I+ R V + +   ++ + + D IAK
Sbjct: 245 AV---YTALKEAELRSTDLLPYWKIDAL----CKIVPRQVKAEKAVTLIRETVEDLIAK 296


>At4g13320.1 68417.m02082 expressed protein 
          Length = 216

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 99  SAVHVHQETSGHHPCQSHPGNKNCI 173
           SA+ +HQE + HH  Q+  G+ N I
Sbjct: 63  SAILLHQEDNHHHDQQTQQGSSNTI 87


>At1g63020.1 68414.m07117 DNA-directed RNA polymerase alpha subunit
           family protein low similarity to RNA polymerase IIA
           largest subunit [Trypanosoma brucei] GI:162215; contains
           InterPro accession IPR000722: RNA polymerase, alpha
           subunit
          Length = 1453

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
 Frame = +1

Query: 163 KIASEGLKGRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRW 342
           ++ S+ L  R   VSLADL   SD +        I+  ++    +CN         K + 
Sbjct: 609 EMLSQWLLMRGLSVSLADLYLSSDLQSRKNLTEEISYGLREAEQVCN---------KQQL 659

Query: 343 MVKKWQTLIEANIDVKTTDGYV-LRVFCIGFTNKDTLSQ 456
           MV+ W+  +  N + K  D    L  FC       TLS+
Sbjct: 660 MVESWRDFLAVNGEDKEEDSVSDLARFCYERQKSATLSE 698


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,435,644
Number of Sequences: 28952
Number of extensions: 306431
Number of successful extensions: 798
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)