Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_K19
(471 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi... 142 2e-35
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 40 2e-04
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 40 3e-04
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 33 0.022
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 32 0.038
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 30 0.15
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 29 0.47
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|... 27 1.4
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 27 1.9
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 25 5.8
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 25 5.8
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 5.8
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 25 7.7
>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
Pin1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 175
Score = 142 bits (344), Expect = 2e-35
Identities = 75/166 (45%), Positives = 104/166 (62%), Gaps = 22/166 (13%)
Frame = +2
Query: 38 LPDGWEMRTSRSTGMSYYLNTYTKKSQWERPEA-------------------PAELT--- 151
LP W ++ SRS Y+ NT T +S WE P A P E +
Sbjct: 6 LPKPWIVKISRSRNRPYFFNTETHESLWEPPAATDMAALKKFIANELQESVTPTEASNSP 65
Query: 152 EIRCSHILVKHVQSRRPSSWREDNITRSKEEALEILKKYRKQIVANDITFVDIATKYSDC 331
+IR SH+LVKH +SRRPSSW+E++ITRSKEEA ++ + Y + + + ++ D+A K SDC
Sbjct: 66 KIRASHLLVKHRESRRPSSWKEEHITRSKEEARKLAEHYEQLLKSGSVSMHDLAMKESDC 125
Query: 332 SSAKRGGDLGMFGKGQMQKAFEEEAFTLPIGQLSKPIETDSGYHII 469
SSA+RGG+LG FG+ +MQK FE+ AF L G++S +ET SG+HII
Sbjct: 126 SSARRGGELGEFGRDEMQKPFEDAAFALKPGEISGVVETSSGFHII 171
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 39.9 bits (89), Expect = 2e-04
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +2
Query: 35 PLPDGWEMRTSRSTGMSYYLNTYTKKSQWERPEAPAELTE 154
PLP GWEMR + +T Y+++ TK + W+ P P+ L +
Sbjct: 346 PLPSGWEMRLT-NTARVYFVDHNTKTTTWDDPRLPSSLDQ 384
Score = 35.5 bits (78), Expect = 0.004
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +2
Query: 38 LPDGWEMRTSRSTGMSYYLNTYTKKSQWERPE----APAELTEIRCSHILVKHVQSRRPS 205
LP GWE RT + G +YY++ T+ + W RP A A E+ S + +PS
Sbjct: 207 LPPGWERRTD-NLGRTYYVDHNTRSTTWIRPNLSSVAGAAAAELHSSASSANVTEGVQPS 265
Query: 206 S 208
S
Sbjct: 266 S 266
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 39.5 bits (88), Expect = 3e-04
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +2
Query: 35 PLPDGWEMRTSRSTGMSYYLNTYTKKSQWERPEAPAELTE 154
PLP GWEMR + S + Y+++ TK + W+ P P+ L +
Sbjct: 365 PLPSGWEMRLTNSARV-YFVDHNTKTTTWDDPRLPSALDQ 403
Score = 34.3 bits (75), Expect = 0.010
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 14 MSNENDAPLPDGWEMRTSRSTGMSYYLNTYTKKSQWERPEAP 139
M +++ LP GWEMR + TG Y+++ T+ + W P P
Sbjct: 300 MQSDSGNDLPFGWEMRYT-DTGRPYFVDHNTRTTTWVDPRNP 340
Score = 33.9 bits (74), Expect = 0.013
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 38 LPDGWEMRTSRSTGMSYYLNTYTKKSQWERP 130
LP GWE R S G +YY++ T+ + W RP
Sbjct: 238 LPPGWERRAD-SLGRTYYVDHNTRTTTWTRP 267
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 33.1 bits (72), Expect = 0.022
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2
Query: 35 PLPDGWEMRTSRSTGMSYYLNTYTKKSQWERP 130
PLP GW + S G+ YY N KKS ++RP
Sbjct: 4 PLPPGWTEHKAPS-GIPYYWNAELKKSTYQRP 34
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 32.3 bits (70), Expect = 0.038
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 35 PLPDGWEMRTSRSTGMSYYLNTYTKKSQWERP 130
PLP GWEMR S + Y+++ TK + W P
Sbjct: 243 PLPAGWEMRLSEDYHV-YFVDHSTKTTTWSDP 273
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 30.3 bits (65), Expect = 0.15
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +2
Query: 44 DGWEMRTSRSTGMSYYLNTYTKKSQWERPEAPAELTEIRCSHILVK-HVQSRRPSSWRED 220
D E++T S YY N+ T+KS WE+PE E + S + K + + W
Sbjct: 35 DWHEVKTEDSR--VYYYNSVTRKSVWEKPEELMNDFEKKLSKLAWKEYATADGKKYWYNV 92
Query: 221 NITRSKEEALEILKKYRKQIV 283
N ++E +I +Y+ +V
Sbjct: 93 N---TRESVWDIPDEYKAALV 110
>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 710
Score = 28.7 bits (61), Expect = 0.47
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 92 LNTYTKKSQWERPEAPAELTEIRCSHILVKH-VQSRRPSSWREDNITRSKEEALEILKK 265
+NTY + + RP+ L + + + VQSR+ S W ++N T +E ++L K
Sbjct: 530 VNTYVRAMAF-RPDVRGRLAVATAGNQVYEFDVQSRKLSEWSKNNSTNMPKEFSQLLDK 587
>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 405
Score = 27.1 bits (57), Expect = 1.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 288 LATICLRYFFNISRASSLLRV 226
L +CL++FFNIS S L V
Sbjct: 343 LGVLCLQHFFNISHPSRCLHV 363
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 26.6 bits (56), Expect = 1.9
Identities = 16/90 (17%), Positives = 30/90 (33%)
Frame = +3
Query: 105 PKNHSGSDQKHLQSSRRSDAVISWSNMCKAAGRHHGVRTTLHAARRRLWKY*KNTANKSW 284
P H+ + + + S ++ +R ++H Y + N+ W
Sbjct: 113 PNKQEDKKDLHIVTQHITPQLTKESKKGSSSAMDKSIRLSIHIMHFTCLLYHGSVRNR-W 171
Query: 285 XXXXXXXXXXPNTLTAHQPNVAETWECSEK 374
+ L QP+V E W CS +
Sbjct: 172 LMNSLLLDGLRDLLVEKQPSVVEAWVCSSQ 201
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 25.0 bits (52), Expect = 5.8
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Frame = +2
Query: 38 LPDGWEMRTSRSTGMSYYLN--TYTKKSQWERP 130
LP GW + G +Y+N + QWE P
Sbjct: 10 LPSGWVAQWDAEYGTYFYVNESAQNPQPQWEPP 42
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 25.0 bits (52), Expect = 5.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 99 HIPKNHSGSDQKHLQSSRRSD 161
H+P NH G+ KH S +S+
Sbjct: 168 HLPINHQGNTWKHANESLQSN 188
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.0 bits (52), Expect = 5.8
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 230 RSKEEALEILKKYRKQIVANDITFVDIATKYSDCSS 337
RSK+E E K ++Q+ + I +++++ S C+S
Sbjct: 737 RSKDELDESYKSLQEQLASKKIEVQNVSSQLSICNS 772
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 24.6 bits (51), Expect = 7.7
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 173 LVKHVQSRRPSS-WREDNITRSKEEALEILKKYRKQIVANDITFVDIAT 316
LV H + SS W + E+A+ L+K KQ++ N I ++ I T
Sbjct: 1168 LVTHDYTGSSSSEWAVRGHKENVEKAIASLEKSIKQVMENCIAYLGIPT 1216
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,085,087
Number of Sequences: 5004
Number of extensions: 42545
Number of successful extensions: 144
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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