Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_K19
(471 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916 113 9e-26
09_04_0095 - 14556508-14556550,14556824-14556966,14557703-145577... 64 7e-11
07_03_1741 + 29156076-29156316,29156554-29156676,29156784-291568... 52 2e-07
04_01_0104 - 1087578-1087702,1088765-1088835,1091542-1092329 50 1e-06
01_06_1796 - 39932487-39932633,39933150-39933201,39933370-399334... 44 8e-05
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 40 0.001
12_01_0794 + 7285100-7285369,7285931-7286338 37 0.007
11_03_0142 + 10675764-10675991,10676533-10676943 35 0.029
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 33 0.088
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 32 0.27
01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769... 31 0.47
09_06_0123 - 20997498-20997512,20998015-20998100,20999066-209991... 30 0.82
05_07_0354 - 29507068-29507170,29507406-29507431,29508264-295083... 30 1.1
03_02_0178 + 6195402-6199158,6199438-6200003 30 1.1
10_05_0007 + 7759814-7760063,7760367-7760507,7760580-7761007 29 2.5
09_02_0133 + 4707944-4708308,4708320-4708534,4708626-4708672,470... 29 2.5
03_02_0147 - 5923117-5923215,5923882-5924069,5924885-5924977,592... 28 3.3
01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833 28 3.3
03_01_0645 - 4731037-4731543,4731706-4731933 28 4.4
02_05_0483 - 29391929-29392256,29393048-29393148,29393640-293938... 27 5.8
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 27 7.6
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072... 27 7.6
>04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916
Length = 234
Score = 113 bits (271), Expect = 9e-26
Identities = 52/110 (47%), Positives = 78/110 (70%), Gaps = 4/110 (3%)
Frame = +2
Query: 152 EIRCSHILVKHVQSRRPSSWREDN----ITRSKEEALEILKKYRKQIVANDITFVDIATK 319
++R SHIL+KH SRR +SWR+ ++++A ++ + R++IVA + F D+AT+
Sbjct: 121 KLRASHILIKHEGSRRKASWRDPEGVAISATTRDDAADLARALREKIVAGERKFEDVATE 180
Query: 320 YSDCSSAKRGGDLGMFGKGQMQKAFEEEAFTLPIGQLSKPIETDSGYHII 469
SDC+SAKRGGDLG F +G+MQKAFE+ L +G++S ++TDSG HII
Sbjct: 181 ESDCNSAKRGGDLGPFERGKMQKAFEKAVLALKVGEISDVVDTDSGVHII 230
>09_04_0095 -
14556508-14556550,14556824-14556966,14557703-14557744,
14557940-14558049,14558369-14558519
Length = 162
Score = 63.7 bits (148), Expect = 7e-11
Identities = 26/54 (48%), Positives = 37/54 (68%)
Frame = +2
Query: 308 IATKYSDCSSAKRGGDLGMFGKGQMQKAFEEEAFTLPIGQLSKPIETDSGYHII 469
IA +YS+C S K+GGDLG F +G+M F++ AF+ P+G S P ++ GYH I
Sbjct: 102 IAQEYSECPSGKKGGDLGWFPRGKMAGPFQDVAFSTPVGATSAPFKSTHGYHFI 155
>07_03_1741 +
29156076-29156316,29156554-29156676,29156784-29156875,
29157577-29157677,29157752-29157862,29158254-29158362,
29158589-29158639,29158758-29158838
Length = 302
Score = 52.4 bits (120), Expect = 2e-07
Identities = 26/77 (33%), Positives = 42/77 (54%)
Frame = +2
Query: 239 EEALEILKKYRKQIVANDITFVDIATKYSDCSSAKRGGDLGMFGKGQMQKAFEEEAFTLP 418
E+ + +L K I+ D+A +YS C S + GG LG +GQM FEE AF P
Sbjct: 105 EQDVRLLVDLEKNIITGGADLSDLAVEYSLCPSKENGGMLGWVRRGQMVPEFEEAAFGAP 164
Query: 419 IGQLSKPIETDSGYHII 469
+ ++ + +T G+H++
Sbjct: 165 LNKVVR-CKTKFGWHLL 180
>04_01_0104 - 1087578-1087702,1088765-1088835,1091542-1092329
Length = 327
Score = 49.6 bits (113), Expect = 1e-06
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = +2
Query: 359 GMFGKGQMQKAFEEEAFTLPIGQLSKPIETDSGYHII 469
G FG+ QMQK FE+ F L +G++S ++TDSG HII
Sbjct: 287 GTFGRRQMQKPFEDATFALKVGEMSDTVDTDSGVHII 323
>01_06_1796 -
39932487-39932633,39933150-39933201,39933370-39933495,
39933645-39933743,39934039-39934258,39934599-39934764,
39935108-39935161,39935527-39935657,39935747-39935818,
39936524-39936602,39936705-39936783,39936868-39936902,
39936986-39937111
Length = 461
Score = 43.6 bits (98), Expect = 8e-05
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +2
Query: 38 LPDGWEMRTSRSTGMSYYLNTYTKKSQWERPEA 136
LP+ WE +STG YY NT T+ +QWE P A
Sbjct: 235 LPENWEEALDQSTGQKYYYNTNTQATQWEPPTA 267
Score = 37.9 bits (84), Expect = 0.004
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 38 LPDGWEMRTSRSTGMSYYLNTYTKKSQWERPEAP 139
LP GW ++G SY+ N T +QW+RP AP
Sbjct: 188 LPPGWVEAKDPTSGASYFYNQSTGTTQWDRPGAP 221
>01_03_0256 +
14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 17 SNENDAPLPDGWEMRTSRSTGMSYYLNTYTKKSQWERP--EAP 139
+ N LP GWE R TG S+Y++ T+ + WE P EAP
Sbjct: 519 NGRNPRTLPPGWEERFDSVTGKSFYIDHNTRTTTWEHPCQEAP 561
>12_01_0794 + 7285100-7285369,7285931-7286338
Length = 225
Score = 37.1 bits (82), Expect = 0.007
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = +2
Query: 26 NDAPLPDGWEMRTSRSTGMSYYLNTYTKKSQWERPEAPAELTEIRCS 166
ND PLP WE +G YYLN T K W RP+ + E+ S
Sbjct: 76 ND-PLPLDWEQCLDLQSGRMYYLNRKTLKKSWIRPKEQSVNLELNIS 121
>11_03_0142 + 10675764-10675991,10676533-10676943
Length = 212
Score = 35.1 bits (77), Expect = 0.029
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +2
Query: 26 NDAPLPDGWEMRTSRSTGMSYYLNTYTKKSQWERP 130
ND PLP WE +G YYLN T + W RP
Sbjct: 62 ND-PLPMDWEQCLDLHSGRMYYLNRKTMRKSWVRP 95
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 33.5 bits (73), Expect = 0.088
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 29 DAPLPDGWEMRTSRSTGMSYYLNTYTKKSQWERPEAP 139
D LP W +TG Y+ N TK Q++RP AP
Sbjct: 20 DPTLPKPWRGLIDGNTGYLYFWNPETKAVQYDRPTAP 56
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 31.9 bits (69), Expect = 0.27
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 26 NDAPLPDGWEMRTSRSTGMSYYLNTYTKKSQWERPEAPAE 145
+D LP W +TG YY N T +Q+E+P P +
Sbjct: 15 DDPSLPKPWRGLVDGTTGYLYYWNPETNITQYEKPLPPED 54
>01_05_0199 -
19174971-19175105,19176302-19176628,19176813-19176915,
19178852-19178916,19179941-19180048,19180213-19180305,
19180395-19180442,19180801-19180899,19180980-19181096,
19181186-19181239,19181312-19181404,19181776-19181881,
19182050-19182084,19182173-19182259,19182385-19182462,
19182528-19182596,19182682-19182780,19183644-19183685,
19184498-19184570,19184654-19184982,19185070-19185127,
19185217-19185269,19186075-19186144,19186276-19186337,
19186452-19186540,19186906-19187011,19187110-19187178,
19187295-19187330
Length = 900
Score = 31.1 bits (67), Expect = 0.47
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 50 WEMRTSRSTGMSYYLNTYTKKSQWERP 130
W+ TS + G YY N T++S WE+P
Sbjct: 111 WQEHTS-ADGKKYYYNKKTRQSSWEKP 136
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 50 WEMRTSRSTGMSYYLNTYTKKSQWERPEAPAELTEIRCSHILVKHVQSRRPSSWRE 217
W+ T++ G YY N TK+S+W P+ E++ + L + + RP E
Sbjct: 152 WKEFTTQE-GRKYYYNKVTKQSKWTIPD------ELKIARELAEKASNPRPDQETE 200
>09_06_0123 -
20997498-20997512,20998015-20998100,20999066-20999198,
20999264-20999341,21000130-21000216,21001164-21001254,
21001338-21001488,21001567-21002296,21002404-21002820
Length = 595
Score = 30.3 bits (65), Expect = 0.82
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 117 SGSDQKHLQSSRRSDAVISWSNMCKAAGRHHGVRTTLHAARRRLW 251
SG+ SSRR +W+N ++AG +H + + R LW
Sbjct: 252 SGTSSSANDSSRRISGNNNWNNNGRSAGSNHNAAGSGDGSNRNLW 296
>05_07_0354 -
29507068-29507170,29507406-29507431,29508264-29508301,
29508722-29508825,29509005-29509024,29509251-29509299,
29510319-29510406,29510463-29510562,29510660-29510737,
29512688-29512804,29513718-29513821,29514497-29514569,
29514904-29514981,29515091-29515215,29515278-29515341,
29515439-29515597,29515950-29516048,29516496-29516624,
29517010-29517075,29517160-29517304,29517379-29517500,
29517683-29517838,29517918-29518029,29518891-29519036,
29519148-29519252,29519391-29519540,29519703-29519776,
29519902-29520055,29520142-29520408
Length = 1016
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +2
Query: 173 LVKHVQSRRPSSWREDNITRSKEEALEILKKYRKQIVANDIT 298
+ + V + S W+ D T K+E ++++KK+ Q+ N++T
Sbjct: 125 ITRKVDTNNKSEWQLDGTTVPKKEVIDLIKKFNIQV--NNLT 164
>03_02_0178 + 6195402-6199158,6199438-6200003
Length = 1440
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 245 ALEILKKYRKQIVANDITFVDIATKYSDCSSAKRGGDLGMFGKGQMQKAFEEEA 406
ALEI KK ++ + ++ +AT S + + + G +M ++FE +A
Sbjct: 580 ALEIAKKCKQSAITEELVHEKVATSPSQGAPEMKKNEKGTISSKKMSESFEPDA 633
>10_05_0007 + 7759814-7760063,7760367-7760507,7760580-7761007
Length = 272
Score = 28.7 bits (61), Expect = 2.5
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = -1
Query: 435 LLSCPIGNVKASSSNAFCICPFPN-IPKSPPRLADEQSEYL-VAISTKVISLATICLRYF 262
+LS P +SSNA CI P I KSP L + S+ + AI+ K I++ ++ +
Sbjct: 203 VLSAPGQPTAVNSSNAPCIAPIRRPICKSP--LGNPMSKKIPSAIAVKRIAIPSLKINAQ 260
Query: 261 FNISRASS 238
N+S A+S
Sbjct: 261 SNVSDATS 268
>09_02_0133 +
4707944-4708308,4708320-4708534,4708626-4708672,
4708997-4709393,4710042-4710608,4710708-4710838,
4711274-4711747
Length = 731
Score = 28.7 bits (61), Expect = 2.5
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 80 MSYYLNTYTKKSQWERPEAPAELTEIRCSHILVKHV-QSRRPSSWREDNITRSKEEALEI 256
+ Y L+ +TKK + +A A +TE + +L +H+ + P + E N R EA ++
Sbjct: 299 LRYMLDLFTKKKYFSEVQAYAHVTEFQKRGLLHEHILLTMNPCKFFEMN--RKDPEARKL 356
Query: 257 LKK 265
L K
Sbjct: 357 LYK 359
>03_02_0147 -
5923117-5923215,5923882-5924069,5924885-5924977,
5925499-5925628,5925720-5925802,5925893-5925976,
5926253-5926316,5926375-5926515,5926801-5926863,
5926968-5927006,5927126-5927185,5927567-5927624,
5927708-5928099
Length = 497
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 122 PTVIFWYMCSGSMTSQLSGSFSSPSRRATVRHFRL 18
P+ + MC GS++ +G S +R A +HF L
Sbjct: 284 PSSLIVIMCLGSLSRSFTGVASGATRAALTQHFAL 318
>01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833
Length = 503
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 119 TVIFWYMCSGSMTSQLSGSFSSPSRRAT 36
T +F C GS+T Q+ G+ +PS AT
Sbjct: 159 TTVFTGPCQGSVTLQVDGTIVAPSEPAT 186
>03_01_0645 - 4731037-4731543,4731706-4731933
Length = 244
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +2
Query: 32 APLPDGWEMRTSRSTGMSYYLNTYTKK--SQWERPEAP 139
APLP W+ +G +Y NT T K S+ R EAP
Sbjct: 63 APLPLEWQRCLDIKSGQIHYYNTRTHKRTSRDPRAEAP 100
>02_05_0483 -
29391929-29392256,29393048-29393148,29393640-29393834,
29394124-29394240,29394376-29394447,29394840-29394950,
29395029-29395127,29395991-29396047,29396607-29397008,
29397249-29397303,29397725-29397809,29398023-29398130,
29398229-29398295,29398717-29398875,29399277-29399405
Length = 694
Score = 27.5 bits (58), Expect = 5.8
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +2
Query: 254 ILKKYRKQIVANDITFVDIATKYSDCSSAKRGGDLGM-FGKGQMQKAFEEEAFTLPIG-Q 427
ILK+YR +I+ + F D K+ + S + D + + +A A +P G
Sbjct: 617 ILKRYRSRIIGEQMDF-DTLLKFINELSGEINLDRAIQDAEALCDQAGPNGAACIPPGTP 675
Query: 428 LSKPIETDSGYHI 466
S PIETD G ++
Sbjct: 676 PSMPIETDGGLYV 688
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 26 NDAPLPDGWEMRTSRSTGMSYYLNTYTKKSQWERPEA 136
+D LP W+ ST YY N T ++Q+ERP A
Sbjct: 18 DDPTLPAPWKGLIDGST--LYYWNPDTNETQYERPVA 52
>10_08_0425 -
17806117-17806401,17806862-17806984,17807076-17807222,
17807307-17807450,17808557-17808668,17808762-17808898,
17809016-17809156,17810921-17811004,17811275-17811742,
17811858-17811936,17812494-17812506,17813884-17814460,
17814502-17814774,17814899-17815045,17815354-17815413,
17816124-17816510
Length = 1058
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 50 WEMRTSRSTGMSYYLNTYTKKSQWERPEAPAEL 148
W + T+ S G YY + K S W+ P AEL
Sbjct: 494 WSIVTT-SDGKKYYYDNKLKVSSWQLPPEVAEL 525
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,109,510
Number of Sequences: 37544
Number of extensions: 302889
Number of successful extensions: 890
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -