Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_K19
(471 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g18040.1 68415.m02097 peptidyl-prolyl cis-trans isomerase (PI... 122 9e-29
At1g26550.1 68414.m03235 peptidyl-prolyl cis-trans isomerase PPI... 67 6e-12
At5g19370.1 68418.m02308 rhodanese-like domain-containing protei... 45 2e-05
At3g59770.1 68416.m06670 sacI homology domain-containing protein... 44 5e-05
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 38 0.003
At2g41020.2 68415.m05066 WW domain-containing protein contains P... 37 0.008
At2g41020.1 68415.m05067 WW domain-containing protein contains P... 37 0.008
At3g13225.1 68416.m01660 WW domain-containing protein contains P... 33 0.13
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 32 0.17
At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein ... 32 0.23
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai... 31 0.52
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 30 0.69
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 30 0.69
At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein ... 30 0.69
At4g08950.1 68417.m01473 phosphate-responsive protein, putative ... 27 4.8
At1g77800.1 68414.m09059 PHD finger family protein contains Pfam... 27 4.8
At1g45231.2 68414.m05189 WW domain-containing protein Since this... 27 4.8
At5g67570.1 68418.m08520 pentatricopeptide (PPR) repeat-containi... 27 6.4
At5g61700.1 68418.m07741 ABC transporter family protein ABC fami... 27 6.4
At4g01250.1 68417.m00164 WRKY family transcription factor contai... 27 6.4
At3g11960.2 68416.m01476 cleavage and polyadenylation specificit... 27 6.4
At3g11960.1 68416.m01475 cleavage and polyadenylation specificit... 27 6.4
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai... 27 6.4
At1g29570.1 68414.m03616 zinc finger protein-related contains si... 27 8.5
At1g15125.1 68414.m01806 S-adenosyl-L-methionine:carboxyl methyl... 27 8.5
At1g13770.1 68414.m01616 expressed protein contains Pfam domain,... 27 8.5
>At2g18040.1 68415.m02097 peptidyl-prolyl cis-trans isomerase (PIN1)
/ cyclophilin / rotamase identical to Chain A, Solution
Structure Of Pin1at From Arabidopsis Thaliana
GI:22218833; contains Pfam profile PF00639: PPIC-type
PPIASE domain
Length = 119
Score = 122 bits (295), Expect = 9e-29
Identities = 57/114 (50%), Positives = 79/114 (69%), Gaps = 4/114 (3%)
Frame = +2
Query: 140 AELTEIRCSHILVKHVQSRRPSSWREDN----ITRSKEEALEILKKYRKQIVANDITFVD 307
A +++ SHIL+KH SRR +SW++ +T ++E A+E LK R+ IV+ F +
Sbjct: 2 ASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEE 61
Query: 308 IATKYSDCSSAKRGGDLGMFGKGQMQKAFEEEAFTLPIGQLSKPIETDSGYHII 469
+AT+ SDCSSAKRGGDLG FG+GQMQK FEE + L +G +S ++TDSG HII
Sbjct: 62 VATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHII 115
>At1g26550.1 68414.m03235 peptidyl-prolyl cis-trans isomerase
PPIC-type family protein similar to SP|Q9Y237
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4
(EC 5.2.1.8) (Rotamase Pin4) (PPIase Pin4) (Parvulin 14)
{Homo sapiens}; contains Pfam profile PF00639: PPIC-type
PPIASE domain
Length = 142
Score = 66.9 bits (156), Expect = 6e-12
Identities = 28/57 (49%), Positives = 38/57 (66%)
Frame = +2
Query: 299 FVDIATKYSDCSSAKRGGDLGMFGKGQMQKAFEEEAFTLPIGQLSKPIETDSGYHII 469
F IA +YS+C S K+GGDLG F +G+M F++ AF P+G S P ++ GYHII
Sbjct: 79 FAKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQDVAFNTPVGVTSAPFKSTHGYHII 135
>At5g19370.1 68418.m02308 rhodanese-like domain-containing protein /
PPIC-type PPIASE domain-containing protein low
similarity to MPT-synthase sulfurylase [Synechococcus
sp. PCC 7942] GI:2950364; contains Pfam profiles
PF00581: Rhodanese-like domain, PF00639: PPIC-type
PPIASE domain; identical to cDNA peptidyl-prolyl
cis-trans isomerase GI:2246379
Length = 299
Score = 45.2 bits (102), Expect = 2e-05
Identities = 26/78 (33%), Positives = 40/78 (51%)
Frame = +2
Query: 236 KEEALEILKKYRKQIVANDITFVDIATKYSDCSSAKRGGDLGMFGKGQMQKAFEEEAFTL 415
K +E+ + +K+ + + D+A +YS C S K GG LG GQM FEE AF
Sbjct: 104 KNNDVELFAELQKKFLDGE-EMSDLAAEYSICPSKKDGGILGWVKLGQMVPEFEEAAFKA 162
Query: 416 PIGQLSKPIETDSGYHII 469
+ Q+ + T G H++
Sbjct: 163 ELNQVVR-CRTQFGLHLL 179
>At3g59770.1 68416.m06670 sacI homology domain-containing protein /
WW domain-containing protein contains Pfam profiles
PF00397: WW domain, PF02383: SacI homology domain;
identical to cDNA SAC domain protein 9 (SAC9)
GI:31415734
Length = 1630
Score = 44.0 bits (99), Expect = 5e-05
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2
Query: 29 DAPLPDGWEMRTSRSTGMSYYLNTYTKKSQWERP 130
+APLP GWE R TG SYY++ TK + W P
Sbjct: 507 NAPLPPGWEKRADAVTGKSYYIDHNTKTTTWSHP 540
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 29 DAPLPDGWEMRTSRSTGMSYYLNTYTKKSQWERPEAP 139
D LP W+ STG+ YY N T +Q+ERP AP
Sbjct: 19 DPTLPQPWKGLIDGSTGILYYWNPETNVTQYERPSAP 55
>At2g41020.2 68415.m05066 WW domain-containing protein contains Pfam
domain PF00397: WW domain
Length = 382
Score = 36.7 bits (81), Expect = 0.008
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 26 NDAPLPDGWEMRTSRSTGMSYYLNTYTKKSQWERP 130
N + LP GW ++G +YY N +T QWERP
Sbjct: 190 NASTLPLGWVDAKDPASGATYYYNQHTGTCQWERP 224
>At2g41020.1 68415.m05067 WW domain-containing protein contains Pfam
domain PF00397: WW domain
Length = 463
Score = 36.7 bits (81), Expect = 0.008
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 26 NDAPLPDGWEMRTSRSTGMSYYLNTYTKKSQWERP 130
N + LP GW ++G +YY N +T QWERP
Sbjct: 190 NASTLPLGWVDAKDPASGATYYYNQHTGTCQWERP 224
>At3g13225.1 68416.m01660 WW domain-containing protein contains Pfam
profile PF00397: WW domain
Length = 863
Score = 32.7 bits (71), Expect = 0.13
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 32 APLPDGWEMRTSRSTGMSYYLNTYTKKSQWERP 130
A LP W+ ST YY NT T ++ W RP
Sbjct: 829 ANLPSEWQAYWDESTKKVYYGNTSTSQTSWTRP 861
Score = 29.9 bits (64), Expect = 0.91
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 14 MSNENDAP--LPDGWEMRTSRSTGMSYYLNTYTKKSQWERPEAPAELT 151
+S E+ AP + W+M + YY NT T ++ WE P + T
Sbjct: 144 VSLEHQAPTDVTSQWKMILHEESNQYYYWNTETGETSWELPTVLTQTT 191
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 32.3 bits (70), Expect = 0.17
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +2
Query: 131 EAPAEL--TEIRCSHILVKHVQSRRPSSWREDNITRSKEEALEILKKYRKQIVANDITFV 304
EA AEL ++ CS + + + R + W ++ +T + E+ +++ V
Sbjct: 168 EATAELARSQAMCSRLSQEKELTERHAKWLDEELTAKVDSYAELRRRHSDLESEMSAKLV 227
Query: 305 DIATKYSDCSSA 340
D+ Y +CSS+
Sbjct: 228 DVEKNYIECSSS 239
>At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 917
Score = 31.9 bits (69), Expect = 0.23
Identities = 22/82 (26%), Positives = 34/82 (41%)
Frame = +2
Query: 173 LVKHVQSRRPSSWREDNITRSKEEALEILKKYRKQIVANDITFVDIATKYSDCSSAKRGG 352
L+ + +S+R SS +D SK L+ +K AND FV S S ++
Sbjct: 30 LITYERSKRKSSLHDDEDLISKRRCLDFQRKIEDNECANDGVFVAPPRFKSGQVSIRQRS 89
Query: 353 DLGMFGKGQMQKAFEEEAFTLP 418
D + + F +AF P
Sbjct: 90 DAPLSSQAVKHDEFANDAFYKP 111
>At3g19670.1 68416.m02492 FF domain-containing protein / WW
domain-containing protein weak similarity to
huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
GI:3341980; contains Pfam profiles PF01846: FF domain,
PF00397: WW domain
Length = 960
Score = 30.7 bits (66), Expect = 0.52
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 50 WEMRTSRSTGMSYYLNTYTKKSQWERP 130
W TS + G Y+ N TKKS WE+P
Sbjct: 209 WVEHTS-ADGRKYFFNKRTKKSTWEKP 234
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 50 WEMRTSRSTGMSYYLNTYTKKSQWERPE 133
W+ +S G YY N TK+S W PE
Sbjct: 250 WKEHSSPD-GRKYYYNKITKQSTWTMPE 276
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 30.3 bits (65), Expect = 0.69
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 50 WEMRTSRSTGMSYYLNTYTKKSQWERPE 133
W TS G YY N T +S+WE+PE
Sbjct: 597 WTEHTSPD-GFKYYYNGLTGESKWEKPE 623
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 30.3 bits (65), Expect = 0.69
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 50 WEMRTSRSTGMSYYLNTYTKKSQWERPE 133
W TS G YY N T +S+WE+PE
Sbjct: 355 WTEHTSPD-GFKYYYNGLTGESKWEKPE 381
>At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 310
Score = 30.3 bits (65), Expect = 0.69
Identities = 20/83 (24%), Positives = 36/83 (43%)
Frame = -1
Query: 381 ICPFPNIPKSPPRLADEQSEYLVAISTKVISLATICLRYFFNISRASSLLRVMLSSRHDD 202
+ P P SPP D +E+ + + ++ + Y ++R SL+ + S RH++
Sbjct: 58 LSPSPPSSSSPPSRVDTTTEHRLLQAKLILEYDELNEHYELCLNRLQSLMTELDSLRHEN 117
Query: 201 GXXXXXXXXXXXLHRISVSSAGA 133
L RIS SS+ +
Sbjct: 118 DSLRFENSDLLKLIRISTSSSSS 140
>At4g08950.1 68417.m01473 phosphate-responsive protein, putative
(EXO) similar to phi-1 (phosphate-induced gene)
[Nicotiana tabacum] GI:3759184; contains Pfam profile
PF04674: Phosphate-induced protein 1 conserved region
Length = 314
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 315 PNTLTAHQPNVAETWECSEK 374
P + T HQP+VA W+ +EK
Sbjct: 77 PTSKTLHQPSVATWWKTTEK 96
>At1g77800.1 68414.m09059 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1423
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +3
Query: 108 KNHSGSDQKHLQSSRRSDAVISWS 179
K+HSG+D+K +SSR+ D + S S
Sbjct: 102 KSHSGADKKKKKSSRQGDKLRSGS 125
>At1g45231.2 68414.m05189 WW domain-containing protein Since this
genomic sequence region is unfinished, the annotated
gene may be missing a stop codon or start codon
Length = 538
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 50 WEMRTSRSTGMSYYLNTYTKKSQWERPEAPAELTEIRCSHIL 175
W++ G SY+ N T++S+WE P L SH L
Sbjct: 167 WKVYWDSFYGRSYFYNFKTQESKWEPPLGMEHLAYSDESHNL 208
>At5g67570.1 68418.m08520 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 611
Score = 27.1 bits (57), Expect = 6.4
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +2
Query: 230 RSKEEALEILKKYRKQIVANDITFVDIATKYSDCS---SAKRGGDLGM 364
R E E+ + +KQ + + F + +Y + S KRGGD+G+
Sbjct: 59 RETESEAEVYTEAQKQSMEEEARFQTLRREYKQFTRSISGKRGGDVGL 106
>At5g61700.1 68418.m07741 ABC transporter family protein ABC family
transporter, Entamoeba histolytica, EMBL:EH058
Length = 888
Score = 27.1 bits (57), Expect = 6.4
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -1
Query: 381 ICPFPNIPKSPPRLADEQSEYLVAISTKVIS 289
ICP PN P PP L Q E L ++ T S
Sbjct: 75 ICPIPNPPSLPPMLQIPQHE-LRSVKTDFFS 104
>At4g01250.1 68417.m00164 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 298
Score = 27.1 bits (57), Expect = 6.4
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = -2
Query: 95 SGSMTSQLSGSFSSPSRRATVRH 27
SGS+TS+ SGS +S S+R ++H
Sbjct: 93 SGSVTSKPSGSNTSRSKRRKIQH 115
>At3g11960.2 68416.m01476 cleavage and polyadenylation specificity
factor (CPSF) A subunit C-terminal domain-containing
protein similar to Splicing factor 3B subunit 3
(Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
(Pre-mRNA splicing factor SF3b 130kDa subunit)
(SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
A subunit region
Length = 1329
Score = 27.1 bits (57), Expect = 6.4
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -1
Query: 405 ASSSNAFCICPFPN-IPKSPPRLADEQSEYLV 313
AS+ NAF +C FPN P+ R A ++ +++
Sbjct: 1037 ASAGNAFYVCGFPNDSPERMKRFAVGRTRFMI 1068
>At3g11960.1 68416.m01475 cleavage and polyadenylation specificity
factor (CPSF) A subunit C-terminal domain-containing
protein similar to Splicing factor 3B subunit 3
(Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
(Pre-mRNA splicing factor SF3b 130kDa subunit)
(SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
A subunit region
Length = 1379
Score = 27.1 bits (57), Expect = 6.4
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -1
Query: 405 ASSSNAFCICPFPN-IPKSPPRLADEQSEYLV 313
AS+ NAF +C FPN P+ R A ++ +++
Sbjct: 1095 ASAGNAFYVCGFPNDSPERMKRFAVGRTRFMI 1126
>At1g44910.1 68414.m05146 FF domain-containing protein / WW
domain-containing protein contains Pfam profiles
PF01846: FF domain, PF00397: WW domain
Length = 946
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 77 GMSYYLNTYTKKSQWERPE 133
G YY N TK+S+W PE
Sbjct: 251 GKKYYYNKVTKESKWTIPE 269
Score = 26.6 bits (56), Expect = 8.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 86 YYLNTYTKKSQWERP 130
YY N TK+S WE+P
Sbjct: 213 YYYNKRTKQSNWEKP 227
>At1g29570.1 68414.m03616 zinc finger protein-related contains
similarity to zinc finger proteins (CCCH type)
Length = 321
Score = 26.6 bits (56), Expect = 8.5
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +2
Query: 101 YTKKSQWERP-EAPAELTEIRCSHILVKHVQSRRPSSWREDNITRSKEE 244
Y ++ P + P EL C HI+ ++V WRE R +E
Sbjct: 72 YRSSCRFNHPTQRPQELPVRICKHIMDRNVAEPMYQDWRESESERRFDE 120
>At1g15125.1 68414.m01806 S-adenosyl-L-methionine:carboxyl
methyltransferase family protein low similarity to
caffeine synthase [Camellia sinensis] GI:9967143;
contains Pfam profile PF03492: SAM dependent carboxyl
methyltransferase
Length = 347
Score = 26.6 bits (56), Expect = 8.5
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 320 YSDCSSAKRGGDLGMFGKGQMQKAFEEE---AFTLPI 421
+ DC A G + + G M A EEE +F LPI
Sbjct: 211 FLDCQEASTGSEFDLLGSCLMDMAKEEEEVNSFNLPI 247
>At1g13770.1 68414.m01616 expressed protein contains Pfam domain,
PF04884: Protein of unknown function, DUF647; contains
non-consensus (GC) splice site at intron 2
Length = 440
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -2
Query: 122 PTVIFWYMCSGSMTSQLSGSFSSPSRRATVRHFRL 18
P+ +C GS++ +G S +R A +HF L
Sbjct: 166 PSAFIVVVCLGSLSRSFTGVASGATRAALTQHFAL 200
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,082,431
Number of Sequences: 28952
Number of extensions: 230475
Number of successful extensions: 722
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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