Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K18
         (456 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)              218   2e-57
SB_27800| Best HMM Match : CAP_GLY (HMM E-Value=2.5e-39)               31   0.34 
SB_6531| Best HMM Match : EGF_2 (HMM E-Value=0.0016)                   31   0.45 
SB_9329| Best HMM Match : Lectin_C (HMM E-Value=0)                     31   0.60 
SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)                27   9.7  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score =  218 bits (533), Expect = 2e-57
 Identities = 100/145 (68%), Positives = 115/145 (79%)
 Frame = +3

Query: 21  RARMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAV 200
           +  + +L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP  V
Sbjct: 26  KVHVGTLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIV 85

Query: 201 HSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDR 380
           HSRARVRK  EAR KGRH G GKR+GTANARMPQK +W                AKKID 
Sbjct: 86  HSRARVRKADEARSKGRHSGHGKRKGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDN 145

Query: 381 HLYHSLYMKAKGNVFKNKRVLMEYI 455
           H+YHSLYMK+KGNVFKNKRVLMEYI
Sbjct: 146 HMYHSLYMKSKGNVFKNKRVLMEYI 170


>SB_27800| Best HMM Match : CAP_GLY (HMM E-Value=2.5e-39)
          Length = 246

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 10/28 (35%), Positives = 21/28 (75%)
 Frame = +1

Query: 226 TQRRVGKDVTVALVRGEVQLMLECHKKN 309
           +++R GKD+T+A ++G+++L+  C   N
Sbjct: 23  SEKRYGKDITIAALKGKLELITGCSSAN 50


>SB_6531| Best HMM Match : EGF_2 (HMM E-Value=0.0016)
          Length = 407

 Score = 31.1 bits (67), Expect = 0.45
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = -2

Query: 221 ANTSAGMDSNWFLDDQTILDHLTDVLSGISISDFIDLVWIKPHLFFTASHNRGC 60
           +N +   ++NW+   + +    TD++SG+ +     L+     +F+T S   GC
Sbjct: 267 SNATGSDNTNWYQKSRLLESPWTDLVSGLLVPTKFVLIGCCSRMFYTMSGEGGC 320


>SB_9329| Best HMM Match : Lectin_C (HMM E-Value=0)
          Length = 577

 Score = 30.7 bits (66), Expect = 0.60
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
 Frame = -2

Query: 239 TRLCVFANTSAGMDSNWFLD----DQTILDHLTDVL 144
           T++CV A  SA  D+ W +     +QTI +HL DVL
Sbjct: 251 TQMCVQAINSANSDARWLVQSLCCNQTIDEHLIDVL 286


>SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 207 RARVRKNTEARRKGRHCGFGKRRGTANAR 293
           +A  RK    RR+ R  G  K+R TANAR
Sbjct: 17  KANSRKKRRRRRRPRLTGLSKQRQTANAR 45


>SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)
          Length = 816

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +3

Query: 63  ASVMRCGKKKVWLDP-NEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEAR 239
           A+V   G ++   +P  EINE ANT +   I +   +G V+ +PV V     V+K   +R
Sbjct: 507 AAVDELGLEEALQEPVPEINETANTTNELTIVQNEMEGFVL-EPVEV-----VQKGKRSR 560

Query: 240 RK 245
           RK
Sbjct: 561 RK 562


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,462,031
Number of Sequences: 59808
Number of extensions: 282547
Number of successful extensions: 729
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)