Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K18
         (456 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   197   3e-51
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    31   0.30 
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF078789-1|AAK21515.1|  392|Caenorhabditis elegans Hypothetical ...    28   2.8  
AL132943-5|CAB81977.1|  367|Caenorhabditis elegans Hypothetical ...    28   3.7  
Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical pr...    27   4.9  
AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP ...    27   4.9  
AC006762-6|ABJ99063.1|  547|Caenorhabditis elegans Hypothetical ...    27   6.5  
AC006762-5|AAF60553.2|  684|Caenorhabditis elegans Hypothetical ...    27   6.5  
Z81508-5|CAB04138.1|  357|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z72512-1|CAA96663.2|  326|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  197 bits (481), Expect = 3e-51
 Identities = 87/142 (61%), Positives = 112/142 (78%)
 Frame = +3

Query: 30  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 209
           MS+L+LQKRLA++V++CGK +VWLDPNE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60

Query: 210 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 389
            R R+  EARRKGRH G+GKRRGTANARMP+K LW                AKK+D+HLY
Sbjct: 61  FRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLY 120

Query: 390 HSLYMKAKGNVFKNKRVLMEYI 455
           H LY++AKGN FKNK+ L+EYI
Sbjct: 121 HELYLRAKGNNFKNKKNLIEYI 142


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 126  ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 260
            ++T+S +N+R ++ D   +K  V  H     R ++E R+K R  G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 138 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 251
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


>AF078789-1|AAK21515.1|  392|Caenorhabditis elegans Hypothetical
           protein Y44E3B.2 protein.
          Length = 392

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 420 HYPSPSCTRNGRDACLSSSLFC 355
           +YP P+CTR   D C S  LFC
Sbjct: 306 YYPRPTCTRENPD-CDSPYLFC 326


>AL132943-5|CAB81977.1|  367|Caenorhabditis elegans Hypothetical
           protein Y116F11B.8 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -2

Query: 338 TEHPLPLNP*FFLWHSSISCTSPLTKATVTSFPTRLCVFANTSAGMDSNWFLDDQT 171
           TE    L P    W+S  + +   T ATVTS       F++    +DS+   D  T
Sbjct: 238 TEPASTLGPVVIPWNSPGTSSKATTSATVTSLVLGPTTFSSAPQALDSSLAADPST 293


>Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical protein
            ZK512.3 protein.
          Length = 1418

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 227  VFANTSAGMDSNWFLDDQTILDHLTDVLSGISISD 123
            V  ++   + + W L++ +  +HLT +L  I ISD
Sbjct: 1286 VLVDSQKNIPNEWHLENSSKDEHLTSILKMIGISD 1320


>AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP
           homologous cationchannel protein protein.
          Length = 1027

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 227 VFANTSAGMDSNWFLDDQTILDHLTDVLSGISISD 123
           V  ++   + + W L++ +  +HLT +L  I ISD
Sbjct: 895 VLVDSQKNIPNEWHLENSSKDEHLTSILKMIGISD 929


>AC006762-6|ABJ99063.1|  547|Caenorhabditis elegans Hypothetical
           protein Y42G9A.6b protein.
          Length = 547

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -3

Query: 250 RPFLRASVFLRTRAREWTATGFLMTRPSLIILRMFCLELVLAI 122
           RP   AS F + RA  W A+  ++  P+L+ ++ F   +++AI
Sbjct: 262 RPRFGASFFQQIRALTWRASKTVLREPTLLKVQTF-QSIIIAI 303


>AC006762-5|AAF60553.2|  684|Caenorhabditis elegans Hypothetical
           protein Y42G9A.6a protein.
          Length = 684

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -3

Query: 250 RPFLRASVFLRTRAREWTATGFLMTRPSLIILRMFCLELVLAI 122
           RP   AS F + RA  W A+  ++  P+L+ ++ F   +++AI
Sbjct: 399 RPRFGASFFQQIRALTWRASKTVLREPTLLKVQTF-QSIIIAI 440


>Z81508-5|CAB04138.1|  357|Caenorhabditis elegans Hypothetical
           protein F20E11.7 protein.
          Length = 357

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 54  RLAASVMRCGKKKVWLDPNEI 116
           ++A + + CG  K+W DPN I
Sbjct: 171 QIAETSVTCGDDKIWQDPNGI 191


>Z72512-1|CAA96663.2|  326|Caenorhabditis elegans Hypothetical
           protein R07B5.3 protein.
          Length = 326

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -3

Query: 184 LMTRPSLIILRMFCLELVLAISLISFGSSHTFFLPHRITEAASLFCNFRELIL 26
           L+  PS  IL  FC  L  A S++    +  +F  +       LFC+ R LIL
Sbjct: 86  LVRIPSTTILTYFCATLDPAESIVPLLVAVYYFSNYSSQLYTVLFCSTRTLIL 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,467,430
Number of Sequences: 27780
Number of extensions: 201165
Number of successful extensions: 596
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)