Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_K18
         (456 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   4.8  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              21   4.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   6.3  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 26  QDEFPKVTEEACSLC 70
           +DEF +  +  CSLC
Sbjct: 263 EDEFDEFGDSKCSLC 277


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
 Frame = +1

Query: 118 MKSLILIPDXXXXXXXXXXXXXXNQLLSIPALVFAKT--QRRVGKDVTVALVRGE---VQ 282
           MK++++I                N +    ++  AKT   +++  DV    +  E   VQ
Sbjct: 1   MKTILIISAICICVGALSIKDFQNAIRMGQSICMAKTGINKQIINDVNDGKINIEDENVQ 60

Query: 283 LMLECHKKNYGFKGK 327
           L +EC  K + F  K
Sbjct: 61  LYIECAMKKFSFVDK 75


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 148 FCLELVLAISLISFGSSHTFFLPHRITEAASL 53
           + + L+L   LISF     F+LP    E  +L
Sbjct: 236 YTVNLILPTVLISFLCVLVFYLPAEAGEKVTL 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,381
Number of Sequences: 438
Number of extensions: 2335
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)